Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKVKQLEDAVEELLSANYHLENAVARLKKLVGER

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3crp:B 34 34 1.0000 1.0000 1.0000 6.31e-18 2b1f:A, 2b1f:C, 3crp:C
2 1ysa:C 57 33 0.8235 0.4912 0.8485 8.73e-14 1dgc:A, 2dgc:A, 1ysa:D
3 1llm:C 87 28 0.7353 0.2874 0.8929 4.80e-11 1llm:D
4 3i5c:B 198 30 0.7353 0.1263 0.8333 2.86e-10 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
5 5apw:B 64 29 0.7059 0.3750 0.8276 2.98e-09
6 5apw:B 64 32 0.6765 0.3594 0.7188 5.39e-09
7 2bni:C 34 33 0.5294 0.5294 0.5455 3.59e-08 2bni:D, 1u9h:A
8 1uo4:B 31 31 0.5588 0.6129 0.6129 8.83e-08 1uo5:A
9 1fav:A 78 28 0.5000 0.2179 0.6071 9.96e-08 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 1uny:B 30 30 0.5000 0.5667 0.5667 4.80e-06
11 2r2v:C 33 33 0.5000 0.5152 0.5152 1.27e-04 2r2v:D
12 1czq:A 45 30 0.4118 0.3111 0.4667 1.92e-04 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
13 4hjb:C 30 31 0.4118 0.4667 0.4516 0.016 4hjb:D
14 3w8v:A 32 32 0.5000 0.5312 0.5312 0.076 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
15 6lyh:A 358 24 0.3235 0.0307 0.4583 0.64 6lyh:B, 6lyh:C, 6lyh:D, 6lyh:E, 6lyh:F, 6lyh:G, 6lyh:H
16 8tj5:0 1246 19 0.2941 0.0080 0.5263 1.3 8tj5:Y
17 8ofi:C 415 22 0.2647 0.0217 0.4091 7.2
18 8ofi:A 452 22 0.2647 0.0199 0.4091 7.2
19 6gyo:A 501 22 0.2647 0.0180 0.4091 7.2 3etq:A, 3etq:B, 6gyo:B, 6gyo:C, 6gyo:D, 4hbn:A, 4kl1:A, 4kl1:B, 4kl1:C, 4kl1:D, 7np4:A, 7np4:B, 7np4:C, 7np4:D, 4nvp:A, 3otf:A, 3u11:A, 3u11:B
20 8inz:C 465 22 0.2647 0.0194 0.4091 9.6 8inz:A, 8inz:B, 8inz:D, 8io3:C, 8io3:A, 8io3:B, 8io3:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218