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BioLiP
>protein
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEW
KFKE

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a31:B 84 84 0.9881 0.9881 0.9881 9.02e-58 5g04:B, 5g05:B, 9gaw:C, 5jg6:A, 5jg6:D, 2mt5:A, 7qe7:C, 4r2y:A, 4r2y:B, 4r2y:C, 4r2y:D, 8s4g:C, 6tm5:B, 6tnt:B, 4ui9:B
2 8a3t:U 114 86 0.5238 0.3860 0.5116 3.64e-25 8a5y:U
3 4a0c:F 80 83 0.3929 0.4125 0.3976 3.93e-16 8ij1:R, 7shk:R
4 2lgv:A 100 88 0.3571 0.3000 0.3409 1.78e-13 4a0c:D, 8b3g:R, 8b3i:R, 7b5l:R, 7b5m:R, 7b5n:R, 7b5s:R, 8cdk:R, 3dpl:R, 3dqv:R, 3dqv:Y, 4f52:B, 4f52:D, 8gq6:E, 8gq6:D, 8h33:D, 8h33:K, 8h33:L, 8h33:E, 8h34:R, 8h34:Q, 8h34:E, 8h34:D, 8h34:L, 8h34:K, 8h35:E, 8h35:D, 8h35:L, 8h35:K, 8h35:R, 8h35:Q, 8h35:W, 8h35:X, 8h36:E, 8h36:D, 8h37:E, 8h37:D, 8h37:R, 8h37:Q, 8h38:R, 8h3a:R, 8h3f:R, 8h3q:E, 8h3r:E, 8h3r:D, 2hye:D, 8jaq:R, 8jaq:V, 8jas:R, 8jas:V, 8jav:R, 8jav:V, 1ldj:B, 1ldk:C, 5n4w:R, 8or0:B, 8or2:B, 8or3:B, 4p5o:B, 4p5o:D, 7plo:T, 8pql:K, 8q7h:C, 8q7h:D, 8q7r:R, 8qu8:E, 8r5h:R, 6r7i:R, 6r7n:R, 8rhz:C, 8rhz:D, 3rtr:B, 3rtr:D, 3rtr:F, 3rtr:H, 8rwz:R, 8rx0:R, 6ttu:R, 1u6g:B, 8wqa:J, 8wqa:I, 8wqb:I, 8wqb:E, 8wqc:F, 8wqc:J, 8wqe:J, 8wqe:I, 8wqf:I, 8wqf:E, 8wqg:F, 8wqg:J, 8wqh:J, 8wqh:B, 7z8b:R, 7z8r:R, 7z8t:R, 7z8v:R, 7zbz:R
5 7oni:R 86 79 0.3452 0.3372 0.3671 1.59e-12 2ecl:A, 6v9i:R
6 8aaf:e 1527 59 0.2381 0.0131 0.3390 1.38e-05 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
7 6w7z:B 71 28 0.1548 0.1831 0.4643 0.013 6w9a:B, 6w9a:D, 6w9d:B, 6w9d:E, 6w9d:H
8 8i3x:A 60 32 0.1786 0.2500 0.4688 0.055 8i3x:B
9 2ep4:A 74 26 0.1429 0.1622 0.4615 0.068
10 1x4j:A 75 29 0.1548 0.1733 0.4483 0.082
11 4fe3:A 291 43 0.1905 0.0550 0.3721 0.086 2g06:A, 2g06:B, 2g07:A, 2g07:B, 2g08:A, 2g08:B, 2g09:A, 2g09:B, 2g0a:A, 2g0a:B, 2jga:A, 4kx3:A, 4kx5:A, 2vkq:A
12 1v87:A 114 76 0.2738 0.2018 0.3026 0.090
13 7t92:C 317 30 0.1429 0.0379 0.4000 0.092
14 6a3z:A 56 29 0.1548 0.2321 0.4483 0.12
15 7jzv:A 253 30 0.1190 0.0395 0.3333 0.13 8grq:K, 1jm7:A, 7lyb:M
16 4v3k:C 75 29 0.1548 0.1733 0.4483 0.15 7ojx:A, 4v3k:F, 4v3l:C
17 2lxh:C 58 52 0.1905 0.2759 0.3077 0.20 2lxp:C
18 8adl:A 633 52 0.1905 0.0253 0.3077 0.29 8adl:I
19 2ect:A 78 31 0.1429 0.1538 0.3871 0.32
20 6y2x:A 231 75 0.2500 0.0909 0.2800 0.46 6ir0:A, 6y22:A, 6y3j:A
21 6y2x:B 177 63 0.2381 0.1130 0.3175 0.52
22 5zbu:A 74 29 0.1310 0.1486 0.3793 0.69 5zbu:D, 5zc4:A, 5zc4:D
23 3j92:0 36 30 0.1190 0.2778 0.3333 0.86
24 1iym:A 55 28 0.1310 0.2000 0.3929 1.1
25 4lad:B 69 44 0.1786 0.2174 0.3409 1.2
26 7r70:A 150 59 0.2024 0.1133 0.2881 1.4 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
27 6f98:A 78 27 0.1190 0.1282 0.3704 1.7
28 7zj3:A 86 34 0.1310 0.1279 0.3235 2.2 8a38:A, 8a38:B, 8a38:C, 8ams:C, 8ams:D, 7zj3:D, 7zj3:G, 7zj3:J
29 1fp0:A 88 66 0.2381 0.2273 0.3030 2.5
30 5d0m:C 60 27 0.1310 0.1833 0.4074 2.6 5ulh:C, 5ulk:C
31 7kzp:L 370 71 0.2143 0.0486 0.2535 2.6 4ccg:X, 4ccg:Y, 7kzq:L, 7kzq:M, 7kzr:L, 7kzr:M, 7kzs:L, 7kzs:M, 7kzt:L, 7kzt:M, 7kzv:L, 7kzv:M, 3zqs:A
32 7oik:A 4426 26 0.1190 0.0023 0.3846 2.7 7oim:A, 6tax:A, 6tay:A
33 7bvw:A 79 31 0.1310 0.1392 0.3548 4.5 7bvw:B
34 2y43:A 88 67 0.2262 0.2159 0.2836 5.2 2y43:B
35 4orh:H 142 37 0.1548 0.0915 0.3514 6.4 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
36 3lrq:D 84 37 0.1667 0.1667 0.3784 7.9 3lrq:A, 3lrq:B, 3lrq:C
37 6wev:AbA 817 32 0.1429 0.0147 0.3750 8.0 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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