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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFP
EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHPSGH

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oxj:A 156 153 1.0000 0.9808 1.0000 1.02e-107 3luo:A, 4odk:A, 4odl:B, 4odl:A, 4odm:A, 4odm:B, 4odm:C, 4odm:D, 4odn:A, 4odo:A, 4odo:C, 4odo:B, 7oxh:A, 7oxi:A, 7oxk:A
2 4odq:A 106 144 0.5556 0.8019 0.5903 6.67e-43 4odp:A, 4odr:A, 4odr:B, 7oxg:A, 7oxg:B
3 8bjd:A 208 74 0.1569 0.1154 0.3243 0.002 8bje:A, 8bk5:A, 2vcd:A
4 7d80:5 432 65 0.1373 0.0486 0.3231 0.10 7d6z:h, 1w2b:5
5 5ccv:H 767 86 0.1830 0.0365 0.3256 0.46
6 2fco:A 154 44 0.0980 0.0974 0.3409 0.68 2fco:B
7 7c4k:A 614 65 0.1307 0.0326 0.3077 1.3 7c4l:A, 7c4m:A, 7c4n:A
8 7si6:A 873 34 0.0850 0.0149 0.3824 1.9 7si3:A, 7si7:A
9 2qa1:A 488 41 0.1046 0.0328 0.3902 3.6
10 8gzr:A 880 88 0.1699 0.0295 0.2955 3.6 8bcr:A, 8bcr:B, 4c11:B, 5ccv:E, 4ctj:A, 4ctj:C, 4ctk:A, 4ctk:C, 5cuq:A, 5cuq:B, 5e9q:A, 5e9q:C, 5ec8:A, 5ec8:C, 5ehg:A, 5ehg:C, 5ehi:A, 5ehi:C, 5eif:A, 5eif:C, 5eiw:A, 5eiw:C, 5ekx:A, 5ekx:B, 3p8z:A, 3p8z:C, 3p97:A, 3p97:C, 4r8s:A, 4r8s:B, 3vws:A, 2xbm:B, 2xbm:A, 2xbm:C, 2xbm:D, 6xd1:A
11 8gzp:A 854 88 0.1699 0.0304 0.2955 3.7 4c11:A, 5ccv:B, 5ccv:C, 5ccv:D, 5ccv:F, 5ccv:G, 5dto:A, 5f3t:A, 5f3z:A, 5f41:A, 8gzq:A, 4hhj:A, 5hmw:A, 5hmx:A, 5hmy:A, 5hmz:A, 5hn0:A, 5i3p:A, 5i3q:A, 5iq6:A, 6j00:A, 2j7u:A, 2j7w:A, 5jjr:A, 5jjs:A, 4v0q:A, 4v0r:A, 6xd0:A
12 4icy:A 462 41 0.1046 0.0346 0.3902 4.0
13 5ccv:A 849 88 0.1699 0.0306 0.2955 4.4 6h80:A, 6h9r:A, 6izz:A
14 4czm:A 336 47 0.0980 0.0446 0.3191 6.0 4czf:A, 4czg:A, 4czh:A, 4czj:A, 4czj:B, 4czk:A, 4czl:A, 4czm:B
15 5d75:A 120 60 0.1111 0.1417 0.2833 6.1 5gpg:A, 3kz7:A, 1pbk:A
16 8bk4:A 163 51 0.1046 0.0982 0.3137 6.6 8p3d:A, 8p42:A, 8p42:D
17 5aed:A 674 28 0.0850 0.0193 0.4643 7.4 5aed:B, 5aee:A, 5aee:B, 5aeg:A, 5aeg:B, 5oht:A, 5oht:B
18 4nnr:A 102 48 0.1046 0.1569 0.3333 7.7 4nnr:B
19 6qsn:B 884 78 0.1242 0.0215 0.2436 7.9 3eva:A, 3evb:A, 3evc:A, 3evd:A, 3eve:A, 3evf:A, 6qsn:A
20 5v8z:C 98 34 0.0784 0.1224 0.3529 8.9 5v8z:A, 5v90:A, 5v90:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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