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BioLiP
>protein
MKVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENIIPAQIFVEFDAASQGLGIL
LKEQGHDLADYIFANVGTGTSLHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHPPI
PGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCK
PYYVENGAFSGAIGALYLE

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4m7x:A 273 266 1.0000 0.9487 0.9737 0.0 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
2 5e26:B 362 178 0.1737 0.1243 0.2528 2.08e-09 5e26:A, 5e26:C, 5e26:D
3 5kqd:A 312 178 0.1815 0.1506 0.2640 2.31e-09
4 5kpr:A 359 178 0.1815 0.1309 0.2640 5.03e-09 6b3v:A, 2i7p:A, 2i7p:C, 2i7p:B, 2i7p:D, 5kpt:A, 5kpz:A, 5kq8:A, 3mk6:A, 3mk6:C, 3mk6:B, 3mk6:D, 6pe6:A, 3sms:A, 7ue3:A, 7ue4:A, 7ue5:A, 7ue6:A, 7ue7:A, 7ue8:A, 7ueo:A, 7uep:A, 7ueq:A, 7uer:A, 7ues:A, 7uet:A, 7ueu:A, 7uev:A, 7uex:A, 7uey:A, 6x4j:A, 6x4k:A, 6x4l:A
5 2i7n:A 325 318 0.2780 0.2215 0.2264 3.68e-08
6 3smp:B 363 178 0.1660 0.1185 0.2416 1.20e-07 2i7n:B, 3smp:A
7 7t1i:B 314 307 0.3012 0.2484 0.2541 2.60e-04 7t1g:B
8 7t1h:A 342 198 0.2046 0.1550 0.2677 0.33 7t1g:A, 7t1h:B, 7t1i:A, 6uj5:A
9 3pp5:A 63 30 0.0386 0.1587 0.3333 4.0
10 8vjo:B 278 26 0.0502 0.0468 0.5000 4.5 9b9q:A, 9b9q:B, 9b9q:C, 7s2t:A, 7s2t:B, 7s2t:C, 7s4q:A, 7s4q:B, 7s4q:C, 8tk7:B, 8tk7:A, 8tk7:C, 8vjo:A, 8vjo:C
11 8ibv:R 279 30 0.0541 0.0502 0.4667 4.8 8ibu:R
12 7y38:Y 466 70 0.0734 0.0408 0.2714 6.1 6jim:A, 6jim:B
13 7pqk:A 195 57 0.0656 0.0872 0.2982 7.7 5agr:A, 5ags:A, 5agt:A
14 4ke8:C 249 17 0.0386 0.0402 0.5882 8.3 4ke6:A, 4ke7:A, 4ke7:B, 4ke8:A, 4ke8:B, 4ke8:D, 4ke9:A, 4ke9:B, 4ke9:C, 4ke9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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