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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFT
FRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRK
MQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVN
DLRSVLMILHNA

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8b2b:AAA 252 252 0.9960 0.9960 0.9960 0.0 8b2b:BBB, 8b2c:AAA, 4clm:B, 4cno:A, 4cno:B, 4cno:C, 4cno:D, 4cnp:A, 4cnp:B, 6h5c:A, 6h5c:B, 6h5d:A, 6h5d:B, 6h5g:A, 6h5j:A, 1l9w:A, 1l9w:B, 1l9w:C, 1l9w:D, 1qfe:A, 1qfe:B, 6sfe:A, 6sfe:B, 6sfg:A, 4uio:A
2 4guh:B 265 252 0.7659 0.7283 0.7659 3.62e-144 4gug:A, 4gug:B, 4guh:A, 4gui:A, 4gui:B, 4guj:A, 4guj:B, 4iuo:A, 4iuo:B, 3m7w:A, 3m7w:B, 3m7w:C, 3m7w:D, 3m7w:E, 3m7w:F, 3nnt:A, 3nnt:B
3 4h3d:B 254 251 0.5397 0.5354 0.5418 4.86e-99 4h3d:A, 4h3d:C, 4h3d:D, 3js3:A, 3js3:B, 3js3:C, 3js3:D
4 8b2a:BBB 238 217 0.2976 0.3151 0.3456 2.43e-34 8b2a:AAA, 1sfj:A, 1sfj:B, 6sfh:A, 6sfh:B
5 2o7q:A 501 227 0.2659 0.1337 0.2952 1.25e-19 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
6 6hqv:A 1555 212 0.1984 0.0322 0.2358 1.66e-05 6hqv:B
7 6f72:A 548 29 0.0556 0.0255 0.4828 1.5 6f73:A, 6f73:B
8 7tbv:A 682 65 0.0873 0.0323 0.3385 1.7 7tbv:B, 7tbv:C, 7tbv:D
9 1c9y:A 321 69 0.0833 0.0654 0.3043 3.8 1ep9:A, 1fb5:A, 1fvo:A, 1fvo:B, 1oth:A
10 2cu0:A 358 67 0.0833 0.0587 0.3134 4.4 2cu0:B
11 1d7f:A 686 31 0.0437 0.0160 0.3548 9.6 1d7f:B, 1ded:A, 1ded:B, 1i75:A, 1i75:B, 1pam:A, 1pam:B, 1ukq:A, 1ukq:B, 1uks:A, 1uks:B, 1ukt:A, 1ukt:B, 1v3j:A, 1v3j:B, 1v3k:A, 1v3k:B, 1v3l:A, 1v3l:B, 1v3m:A, 1v3m:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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