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BioLiP
>protein
MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFA
QIIHWYIAEQIKYWRQTR

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h9d:D 100 98 1.0000 0.9800 1.0000 1.20e-68 2h9c:A, 2h9c:B, 2h9d:B, 2h9d:C, 3hgw:D, 3hgx:A, 3rem:A, 3rem:B, 3ret:B
2 2h9d:A 84 94 0.8571 1.0000 0.8936 2.75e-55
3 7aor:z 1071 42 0.1837 0.0168 0.4286 0.23
4 4ll2:B 224 44 0.1429 0.0625 0.3182 0.63 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
5 6hiv:Cv 1059 38 0.1735 0.0161 0.4474 0.63 6hiw:Cv, 6hiy:Cv, 7pub:Cv
6 7rj1:A 265 46 0.1531 0.0566 0.3261 0.75 7rj1:B, 7rj1:C, 7rj1:D
7 5en7:A 177 31 0.1020 0.0565 0.3226 2.9 5en6:A, 5en7:C, 5en7:E, 5en7:G
8 6q8j:A 188 31 0.1020 0.0532 0.3226 4.2
9 4iqj:A 1164 28 0.1327 0.0112 0.4643 5.2
10 4iqj:D 1185 28 0.1327 0.0110 0.4643 5.6 3e0d:A, 3e0d:B, 2hpi:A, 2hpm:A, 4iqj:B, 4iqj:C
11 7stm:A 801 45 0.1224 0.0150 0.2667 7.5 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
12 8k3u:A 597 45 0.1327 0.0218 0.2889 7.8 8k3u:B
13 8k3p:A 660 45 0.1327 0.0197 0.2889 7.9 8k3p:B, 8k3t:A, 8k3t:B
14 8k3w:B 694 45 0.1327 0.0187 0.2889 7.9 8k3w:A, 8k3x:A, 8k3x:B
15 7xs6:B 729 45 0.1327 0.0178 0.2889 7.9 8k3v:A, 8k3v:B, 7xs6:A, 7xs7:B, 7xs7:A
16 5msr:B 520 50 0.1531 0.0288 0.3000 8.7 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
17 3aib:G 844 33 0.1224 0.0142 0.3636 9.5 3aib:A, 3aib:B, 3aib:C, 3aib:D, 3aib:E, 3aib:F, 3aib:H, 3aic:A, 3aic:B, 3aic:C, 3aic:D, 3aic:E, 3aic:F, 3aic:G, 3aic:H, 3aie:A, 3aie:B, 3aie:C, 3aie:D, 3aie:E, 3aie:F, 3aie:G, 3aie:H, 8fg8:A, 8fg8:B, 8fj9:A, 8fj9:B, 8fjc:A, 8fjc:B, 8fk4:A, 8fk4:B, 8fk4:C, 8fk4:D, 8fk4:E, 8fk4:F, 8fk4:G, 8fk4:H, 8uf5:A, 8uf5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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