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BioLiP
>protein
MKTIKMVADELNVTKQTVVNNAKNLNISFEKENGVNYIDDNDYLKIVEKITKK

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8csh:D 53 53 1.0000 1.0000 1.0000 3.67e-31 8csh:A
2 5i44:B 68 48 0.2830 0.2206 0.3125 0.21 5i44:A, 5i44:D, 5i44:E, 5i44:H, 5i44:J, 5i44:K, 5i44:G, 5i44:F, 5i44:I
3 1t10:A 556 37 0.2453 0.0234 0.3514 1.9
4 5jsd:A 548 45 0.2642 0.0255 0.3111 4.8 5jsd:B, 5jsd:C, 5jse:A, 5jse:B, 5jse:C
5 8cls:A 837 35 0.2264 0.0143 0.3429 5.6
6 8cls:B 853 35 0.2264 0.0141 0.3429 5.7
7 8bx8:A 4453 23 0.1509 0.0018 0.3478 7.2 7k58:A, 7k5b:A, 7kek:A
8 5xxu:X 135 25 0.1509 0.0593 0.3200 7.7
9 2oox:E 333 54 0.3019 0.0480 0.2963 9.5 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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