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BioLiP
>protein
MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVT

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1cir:A 39 39 1.0000 1.0000 1.0000 2.84e-21 1ciq:A, 1cq4:A
2 1egp:A 39 35 0.3333 0.3333 0.3714 2.35e-04
3 1hym:A 44 38 0.3846 0.3409 0.3947 0.004
4 1ewy:A 303 21 0.2564 0.0330 0.4762 0.87 1b2r:A, 1bjk:A, 2bmw:A, 4bpr:A, 1bqe:A, 2bsa:A, 4c43:A, 1e62:A, 1e63:A, 1e64:A, 1ewy:B, 1gjr:A, 1go2:A, 1gr1:A, 1h42:A, 1h85:A, 1ogi:A, 1ogj:A, 1qgy:A, 1qgz:A, 1qh0:A, 1que:A, 1quf:A, 2vyq:A, 2vzl:A, 1w34:A, 1w35:A, 1w87:A, 1w87:B, 2x3u:A, 3zbt:A, 3zbu:A, 3zc3:A, 3zc3:B
5 6ujf:A 301 29 0.2821 0.0365 0.3793 1.0
6 6o38:A 573 27 0.2821 0.0192 0.4074 1.7 6o38:B, 6o38:C, 6o38:D, 6o38:E, 6o38:F
7 5hje:A 676 38 0.3846 0.0222 0.3947 2.1 5hyv:A, 5i51:A, 5i5e:A, 5i5g:A, 5xps:A, 5xqa:A, 5xqk:A, 5xrv:A, 5xry:A, 5xs6:A, 5xsa:A, 5xsb:A, 5xsm:A, 5xt0:A, 5xt4:A, 5xtl:A, 5xtv:A, 5xtx:A, 5xu2:A, 5xu9:A, 5xuf:A, 5xvt:A
8 4v8l:D 2822 24 0.1795 0.0025 0.2917 2.3 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
9 8pnj:A 390 25 0.3077 0.0308 0.4800 2.4
10 3u4c:A 254 21 0.2564 0.0394 0.4762 4.6
11 6ntz:A 367 21 0.2308 0.0245 0.4286 5.0 3beb:A, 3bec:A, 5j8x:A, 3mzd:A, 3mze:A, 3mzf:A, 1z6f:A
12 5dds:A 514 28 0.2564 0.0195 0.3571 5.4 5dds:B, 5dds:C, 5dds:D, 5ddu:A, 5ddu:B, 5ddu:C, 5ddu:D, 5ddw:A, 5ddw:B, 5ddw:C, 5ddw:D, 6jc7:A, 6jc7:B, 6jc7:C, 6jc7:D, 6jc8:A, 6jc8:B, 6jc8:C, 6jc8:D, 6jc9:A, 6jc9:B, 6jc9:C, 6jc9:D, 8jt3:A, 8jt3:B, 8jt3:C, 8jt3:D
13 7zzi:B 467 21 0.2821 0.0236 0.5238 6.7 7zzi:A
14 7vt5:A 311 30 0.2564 0.0322 0.3333 8.2 7vt6:A, 7vt7:A
15 5xfm:A 632 27 0.2564 0.0158 0.3704 9.2 5xfm:B, 5xfm:C, 5xfm:D
16 1k23:D 231 28 0.3077 0.0519 0.4286 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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