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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKSSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQD
ELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
EIIAKICGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTT
DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDH
RINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSEQE

The query sequence (length=360) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7m5d:A 360 360 1.0000 1.0000 1.0000 0.0 8akn:W, 6b4v:JA, 6b4v:NC, 6boh:JA, 6boh:OC, 6bok:GD, 6bok:HD, 6dnc:MA, 8fzd:w, 8fze:w, 8fzg:w, 8fzh:w, 6gwt:v, 6gxm:v, 6gxn:v, 6gxo:v, 5j30:QY, 5j30:XY, 5j3c:QY, 5j3c:XY, 5j4d:JA, 5j4d:OC, 5o2r:v, 6orl:A, 6osk:A, 6osq:A
2 4v63:AX 354 336 0.4583 0.4661 0.4911 8.76e-112 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
3 7nqh:BL 250 239 0.3556 0.5120 0.5356 2.18e-81
4 8oin:Aa 381 340 0.3750 0.3543 0.3971 6.93e-78 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
5 6c4i:v 362 342 0.3750 0.3729 0.3947 1.08e-66 6c4h:v, 5czp:XY, 5czp:QY, 5dfe:QY, 5dfe:XY, 5h5u:4, 5mdv:7, 5mdw:7, 5mgp:z, 1ml5:Z, 7o1c:B9, 6og7:8, 6ogf:8, 6ogg:8, 7oj0:8, 6ost:7, 6ot3:A, 6ouo:A, 8p16:6, 8p17:6, 8p18:6, 8qk7:6, 5u4i:v, 5u9f:Z, 5u9g:Z
6 6szs:z 362 342 0.3361 0.3343 0.3538 3.49e-62
7 4v4s:AY 365 331 0.3444 0.3397 0.3746 2.19e-48 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
8 5mdy:7 324 331 0.3222 0.3580 0.3505 3.14e-40
9 5u4j:v 132 109 0.1306 0.3561 0.4312 2.16e-21
10 7sa4:8 203 90 0.1083 0.1921 0.4333 8.12e-14
11 7a5h:C 114 51 0.0500 0.1579 0.3529 6.97e-05
12 6yss:y 139 105 0.0972 0.2518 0.3333 1.58e-04 7jss:8, 7jsw:8, 7jsz:8, 7jt1:8, 7jt2:8, 7jt3:8, 7jt3:9, 4v95:AY, 6yst:y, 6ysu:y
13 6lrg:B 681 100 0.0833 0.0441 0.3000 0.35 6lrg:A, 6lrh:A, 6lrh:B
14 7nql:BL 137 74 0.0750 0.1971 0.3649 3.6
15 7vw1:B 92 26 0.0333 0.1304 0.4615 6.4 7vw1:A, 7vw2:B
16 2n9o:A 42 27 0.0278 0.2381 0.3704 8.2 2n9p:A
17 6tux:A 330 51 0.0361 0.0394 0.2549 8.5 6tuw:A, 6tux:B
18 2dby:A 355 59 0.0611 0.0620 0.3729 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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