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BioLiP
>protein
MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2l41:A 77 74 0.9867 0.9610 1.0000 5.35e-50 2xnr:A
2 2mxy:A 105 73 0.3600 0.2571 0.3699 4.12e-11 2mz1:A
3 2n7c:A 89 75 0.3867 0.3258 0.3867 1.27e-08
4 6hpj:B 84 72 0.3067 0.2738 0.3194 3.81e-08
5 7qde:B 169 53 0.2667 0.1183 0.3774 8.11e-07 7qdd:B
6 2rqc:A 115 61 0.2800 0.1826 0.3443 1.42e-06
7 5m8i:A 114 62 0.2667 0.1754 0.3226 3.52e-06
8 4a8x:A 88 62 0.2267 0.1932 0.2742 1.11e-04
9 6m75:A 167 62 0.2400 0.1078 0.2903 1.24e-04
10 2i2y:A 150 57 0.2133 0.1067 0.2807 5.82e-04 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
11 5ifm:C 256 46 0.2267 0.0664 0.3696 8.85e-04 5ifm:A
12 7uj1:B 270 47 0.2267 0.0630 0.3617 0.001 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
13 2mb0:B 95 73 0.3067 0.2421 0.3151 0.002
14 5x8p:v 190 72 0.2800 0.1105 0.2917 0.006 5mmj:v, 5mmm:v, 5x8r:v
15 4lmz:A 176 32 0.1600 0.0682 0.3750 0.007 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
16 4lmz:A 176 67 0.2533 0.1080 0.2836 6.0 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
17 6r5k:H 394 61 0.2533 0.0482 0.3115 0.021 6r5k:D, 6r5k:F
18 2cjk:A 167 62 0.2133 0.0958 0.2581 0.024 2km8:C
19 4f02:A 175 59 0.2133 0.0914 0.2712 0.034 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
20 1fnx:H 174 61 0.2267 0.0977 0.2787 0.039 1fxl:A, 1g2e:A
21 7dvq:Y 140 59 0.2133 0.1143 0.2712 0.089 8i0p:Y, 8i0r:Y
22 5x3z:A 96 67 0.2267 0.1771 0.2537 0.20
23 5kw6:A 201 61 0.1733 0.0647 0.2131 0.25 5kvy:A, 5kvy:B, 5kw1:A, 5kw1:B, 5kw6:B, 7q8a:B, 7q8a:A, 2qfj:A, 2qfj:B, 7z3x:A, 7z3x:B
24 4bs2:A 174 48 0.1867 0.0805 0.2917 0.35 4iuf:A, 4y00:A, 4y00:B, 4y00:C, 4y00:D, 4y0f:A, 4y0f:B
25 2rok:A 100 42 0.1600 0.1200 0.2857 0.38
26 2fy1:A 108 74 0.2533 0.1759 0.2568 0.45
27 2rra:A 99 49 0.1867 0.1414 0.2857 0.54 2kxn:B
28 3d45:B 373 42 0.1600 0.0322 0.2857 0.64 3ctr:A
29 3d2w:A 72 47 0.1733 0.1806 0.2766 0.67
30 3d45:A 383 42 0.1600 0.0313 0.2857 0.68 2a1r:A, 2a1r:B
31 1m06:F 422 17 0.1333 0.0237 0.5882 2.0 1rb8:F
32 7c06:A 193 45 0.1733 0.0674 0.2889 2.6 7c06:G, 7c06:D, 7c06:J, 7c06:M, 7c06:P, 7c06:S, 7c06:V, 7c06:Y, 7c07:A, 7c07:G, 7c07:D, 7c07:J, 7c07:M, 7c07:P, 7c07:S, 7c07:V, 7c07:Y, 7c08:A, 7c08:G, 7c08:D, 7c08:J, 7c08:M, 7c08:P, 7c08:S, 7c08:V, 7c08:Y, 4yh8:A
33 3wem:A 830 37 0.1600 0.0145 0.3243 2.7 3w37:A, 3wel:A, 3wen:A, 3weo:A
34 7ase:J 173 71 0.1733 0.0751 0.1831 3.2 5opt:h
35 5y6p:a8 362 43 0.1867 0.0387 0.3256 3.3 5y6p:a9
36 8hw8:A 326 12 0.1067 0.0245 0.6667 3.7
37 5vj7:A 462 40 0.1600 0.0260 0.3000 3.9
38 6eon:A 754 30 0.1200 0.0119 0.3000 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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