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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKSRIIVRTSFDAAHVHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEITKELDHRNLNNIFENPTTENIALWIGERIRD
KLPPYVKLKRVVLWEGKDNGVELEW

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dtt:B 115 115 1.0000 0.9130 0.9130 4.41e-70 2dtt:A, 2dtt:C, 2dtt:D, 2dtt:F, 2dtt:E
2 2oba:B 121 100 0.3429 0.2975 0.3600 4.80e-15 2oba:A, 2oba:C, 2oba:D, 2oba:E, 2oba:F
3 4ntk:A 121 100 0.3048 0.2645 0.3200 3.43e-12 4ntk:E, 4ntk:B, 4ntk:C, 4ntk:D, 4ntk:F, 4ntm:A, 4ntm:E, 4ntm:B, 4ntm:C, 4ntm:D, 4ntm:F, 4ntn:A, 4ntn:B, 4ntn:C, 4ntn:D, 4ntn:E, 4ntn:F, 3qn0:A, 3qn0:B, 3qn0:C, 3qn0:D, 3qn0:E, 3qn0:F, 3qn9:A, 3qn9:B, 3qna:A, 3qna:B, 3qna:C, 3qna:D, 3qna:E, 3qna:F
4 1b66:A 138 91 0.3333 0.2536 0.3846 1.45e-08 1b66:B, 1b6z:A, 1b6z:B, 1gtq:A, 1gtq:B
5 2g64:A 140 90 0.2476 0.1857 0.2889 3.68e-06
6 2a0s:A 163 57 0.1905 0.1227 0.3509 1.18e-04 2a0s:B, 3lx3:A, 3lze:A, 3m0n:A
7 1y13:A 163 58 0.1714 0.1104 0.3103 0.001 1y13:C, 1y13:B
8 7dn3:A 1293 22 0.1143 0.0093 0.5455 0.46 7du2:A
9 7d58:A 1387 22 0.1143 0.0087 0.5455 0.48 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
10 8ulg:A 827 64 0.1524 0.0193 0.2500 0.73 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
11 3jyg:A 180 53 0.1714 0.1000 0.3396 0.73 3jyg:B, 3jyg:C, 3jyg:D, 3jyg:E, 3jyg:F
12 3jyg:A 180 20 0.0857 0.0500 0.4500 5.8 3jyg:B, 3jyg:C, 3jyg:D, 3jyg:E, 3jyg:F
13 6ytt:C 630 86 0.2190 0.0365 0.2674 1.4 6ytt:B, 6yu9:A, 6yu9:B, 6yu9:C, 6yu9:D, 6yua:B, 6yua:C
14 6iil:A 341 75 0.2190 0.0674 0.3067 1.4 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
15 3h0g:M 1476 39 0.1524 0.0108 0.4103 2.2
16 8f6y:C 409 68 0.1524 0.0391 0.2353 3.2 8f6z:C, 7smm:C, 7smq:C, 7smr:C, 7sms:C, 7smt:C
17 7rs5:K 346 65 0.1714 0.0520 0.2769 3.8 7rs5:a, 7rs5:b, 7rs5:c, 7rs5:d, 7rs5:e, 7rs5:f, 7rs5:g, 7rs5:h, 7rs6:K, 7rs6:a, 7rs6:b, 7rs6:c, 7rs6:d, 7rs6:e, 7rs6:f, 7rs6:g, 7rs6:h
18 1kmm:C 387 53 0.1333 0.0362 0.2642 3.8 2el9:A, 2el9:B, 2el9:C, 2el9:D, 1kmm:A, 1kmn:A, 1kmn:C
19 5zk4:D 73 42 0.1048 0.1507 0.2619 4.4
20 1htt:A 366 53 0.1333 0.0383 0.2642 4.5 1htt:B, 1htt:C, 1htt:D, 1kmm:B, 1kmm:D, 1kmn:B, 1kmn:D
21 4y9j:B 593 59 0.1905 0.0337 0.3390 4.6 4y9j:A, 4y9l:A, 4y9l:B
22 8bsj:SU 121 52 0.1619 0.1405 0.3269 5.2 8br8:SU, 8brm:SU, 8bsi:SU, 8btd:SU, 8btr:SU, 8fvy:R, 8g4s:R
23 7pwf:R 101 44 0.1333 0.1386 0.3182 5.9 7pwo:R1
24 6nci:B 197 45 0.1333 0.0711 0.3111 6.4 6nch:B
25 7r2e:A 244 52 0.1524 0.0656 0.3077 9.3 7r2e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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