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BioLiP
>protein
MKRTTLDSPLGKLELSGCEQGLHEIKLLGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVV
KFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGH

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1eh6:A 168 159 1.0000 0.8810 0.9308 3.37e-104 1eh7:A, 1eh8:A, 1t38:A, 1t39:A, 1t39:B, 1yfh:C, 1yfh:A, 1yfh:B
2 3kzy:A 162 154 0.8716 0.7963 0.8377 2.47e-88 3kzy:B, 3kzz:A, 3l00:A, 6y8p:A
3 4wx9:A 161 153 0.3919 0.3602 0.3791 2.20e-21
4 6ga0:A 154 141 0.2703 0.2597 0.2837 1.79e-11
5 7e1p:A 150 143 0.2973 0.2933 0.3077 2.21e-10 7dqq:A
6 4enj:A 108 70 0.1554 0.2130 0.3286 9.89e-05 4enk:A, 4enm:A, 4enn:A, 4enn:B, 3gx4:X, 3gyh:X, 4hdu:A, 4hdv:A
7 2p3i:A 161 29 0.0811 0.0745 0.4138 5.4 1kqr:A, 2p3j:A, 2p3k:A, 3tb0:A
8 5xu6:C 379 43 0.0946 0.0369 0.3256 6.6 5xu6:A, 5xu6:B, 5xu6:D
9 8vc5:A 488 76 0.1419 0.0430 0.2763 6.6 8vc5:B
10 5olu:A 310 32 0.0811 0.0387 0.3750 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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