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BioLiP
>protein
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6h4n:v 55 55 1.0000 1.0000 1.0000 5.70e-36 6h58:v, 6h58:vv, 4v8g:AV, 4v8g:CV
2 6p25:A 731 13 0.1636 0.0123 0.6923 0.71 6p2r:A
3 5o6m:D 264 37 0.2000 0.0417 0.2973 3.1 5lc9:B, 5lc9:C, 5lc9:D, 5lcd:A, 5lcd:B, 5lcd:C, 5lcd:D, 5ld1:A, 5ld1:D, 5ld1:B, 5ld1:C, 5ldb:A, 5ldb:B, 5ldb:C, 5ldb:D, 5maq:A, 5maq:B, 5maq:C, 5maq:D, 5o6k:A, 5o6k:B, 5o6k:C, 5o6k:D, 5o6m:A, 5o6m:B, 5o6m:C
4 4jmd:B 262 26 0.1636 0.0344 0.3462 4.5 4jmc:A, 4jmc:B, 4jmd:A, 4jme:A, 4jme:B
5 2d5w:A 602 25 0.1818 0.0166 0.4000 8.0 2d5w:B
6 7eip:A 966 21 0.1818 0.0104 0.4762 8.2 7eiq:A, 7eir:A, 7eis:A, 7yke:A
7 5n4b:A 722 38 0.2182 0.0166 0.3158 8.4 5n4b:B, 5n4d:A, 5n4d:B
8 8ybq:A 502 28 0.1818 0.0199 0.3571 8.4 8ybq:B, 8ybq:C
9 5mza:A 440 41 0.2182 0.0273 0.2927 9.4
10 6z5y:A 177 17 0.1455 0.0452 0.4706 9.8 6z5y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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