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BioLiP
>protein
MKRPKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKDPGVPNSAPFKEALLREAELRKQRLEELKQ

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fl2:NB 81 76 1.0000 0.8395 0.8947 2.06e-39 8fl3:NB, 8fl4:NB, 8ir1:u, 8ir3:u
2 8fkt:NB 387 68 0.9853 0.1731 0.9853 2.23e-38 8fkp:NB, 8fku:NB, 8fkv:NB, 8fkw:NB, 8fkx:NB, 8fky:NB, 8fkz:NB, 8fl0:NB, 8ink:u, 8ipd:u, 8ipx:u, 8ipy:u
3 8i9w:CL 397 65 0.4265 0.0730 0.4462 4.77e-05 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
4 7uoo:s 72 29 0.1912 0.1806 0.4483 0.045 6elz:s, 6em5:s, 6ft6:s, 3jct:s, 6m62:s, 7nac:s, 7oh3:s, 7ohq:s, 7ohr:s, 7r7a:s, 7u0h:s, 7ug6:s, 7uqb:s, 7uqz:s, 7v08:s, 8v87:s, 6ylg:s, 6ylh:s, 6ylx:s, 6yly:s
5 6eqo:A 1804 16 0.1176 0.0044 0.5000 1.8 6eqo:B
6 7dei:B 377 26 0.1618 0.0292 0.4231 2.2 7dei:A
7 6j72:A 561 48 0.2059 0.0250 0.2917 2.5
8 7cyy:C 497 42 0.2059 0.0282 0.3333 2.8 7cx7:A, 7cx7:B, 7cx7:C, 7cx7:D, 7cx7:E, 7cx7:F, 7cyy:A, 7cyy:B, 7cyy:D, 7cyy:E, 7cyy:F
9 4r1q:E 496 42 0.2059 0.0282 0.3333 3.1 4r1p:A, 4r1p:B, 4r1p:C, 4r1p:D, 4r1p:E, 4r1p:F, 4r1q:A, 4r1q:D, 4r1q:B, 4r1q:F, 4r1q:C
10 6dtq:A 391 54 0.2353 0.0409 0.2963 3.7 6dtq:B, 6dtq:C, 6dtq:D
11 2yy5:B 346 36 0.1912 0.0376 0.3611 6.2 2yy5:A, 2yy5:C, 2yy5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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