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BioLiP
>protein
MKQIEDKLEEILSKGHHICNELARIKKLLGE

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bni:C 34 31 1.0000 0.9118 1.0000 6.56e-16 2bni:D, 1u9h:A
2 1uo4:B 31 31 0.8710 0.8710 0.8710 8.30e-11 1uo5:A
3 1ysa:C 57 31 0.6774 0.3684 0.6774 3.03e-10 1dgc:A, 2dgc:A, 1ysa:D
4 1uny:B 30 29 0.8065 0.8333 0.8621 3.14e-09
5 1fav:A 78 28 0.7097 0.2821 0.7857 9.69e-09 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
6 2r2v:C 33 31 0.6452 0.6061 0.6452 1.25e-08 2r2v:D
7 5apw:B 64 30 0.6129 0.2969 0.6333 3.45e-08
8 5apw:B 64 29 0.6129 0.2969 0.6552 1.04e-07
9 1czq:A 45 29 0.7097 0.4889 0.7586 2.19e-07 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
10 3i5c:B 198 29 0.6129 0.0960 0.6552 3.19e-07 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
11 3crp:B 34 31 0.5484 0.5000 0.5484 4.77e-07 2b1f:A, 2b1f:C, 3crp:C
12 1llm:C 87 28 0.5806 0.2069 0.6429 1.08e-06 1llm:D
13 4hjb:C 30 30 0.7419 0.7667 0.7667 6.15e-06 4hjb:D
14 5v2o:A 60 23 0.3548 0.1833 0.4783 4.5 5v2o:B, 5v2o:C, 5v2o:D, 5v2o:E, 5v2o:F
15 5v2o:A 60 23 0.3548 0.1833 0.4783 4.5 5v2o:B, 5v2o:C, 5v2o:D, 5v2o:E, 5v2o:F
16 3dc6:C 198 16 0.2903 0.0455 0.5625 5.1 3dc6:A
17 6msj:A 413 27 0.3548 0.0266 0.4074 6.8 8cvt:A, 5gjq:H, 5gjr:H, 5gjr:v, 5l4g:H, 5m32:c, 6msb:A, 6msd:A, 6mse:A, 6msg:A, 6msk:A, 7qxn:A, 7qxp:A, 7qxu:A, 7qxw:A, 7qxx:A, 7qy7:A, 7qya:A, 7qyb:A, 5t0c:AA, 5t0c:BA, 5t0g:A, 5t0h:A, 5t0i:A, 5t0j:A, 5vfp:A, 5vfq:A, 5vfr:A, 5vfs:A, 7w37:A, 7w38:A, 7w39:A, 7w3a:A, 7w3b:A, 7w3f:A, 7w3g:A, 7w3h:A, 7w3i:A, 7w3j:A, 7w3k:A, 6wjd:A, 6wjn:A
18 7uk7:A 389 22 0.2258 0.0180 0.3182 6.8
19 3n29:A 371 25 0.3871 0.0323 0.4800 7.9 3n29:B
20 3w8v:A 32 29 0.3548 0.3438 0.3793 9.7 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
21 1esd:A 302 12 0.2581 0.0265 0.6667 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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