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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVH
RIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGH

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2qie:A 136 136 1.0000 1.0000 1.0000 2.41e-97 2qie:E, 2qie:H, 2qie:K
2 2wp4:B 132 117 0.3309 0.3409 0.3846 1.85e-22
3 6nbe:N 186 42 0.1176 0.0860 0.3810 0.21 6nas:N, 6nbw:N
4 5u03:A 559 117 0.2059 0.0501 0.2393 0.80 7mgz:F, 7mgz:P, 7mgz:O, 7mgz:Q, 7mh0:A, 7mh0:B, 7mh0:C, 7mh0:D, 7mif:C, 7mif:G, 7mif:H, 7mif:I, 7mig:C, 7mig:A, 7mig:B, 7mig:E, 7mip:C, 7mip:D, 7mip:G, 7mip:I, 5u03:B, 5u03:C, 5u03:D
5 2d7d:A 621 58 0.1103 0.0242 0.2586 1.6 2nmv:A, 3v4r:B, 3v4r:A
6 1zun:B 394 48 0.1250 0.0431 0.3542 1.8
7 4a5l:A 313 42 0.1176 0.0511 0.3810 2.4 4a5l:B, 4a65:A, 4a65:B, 4cbq:A, 4cbq:B, 4ccq:A, 4ccq:B, 4ccr:A, 4ccr:B, 4ccr:C, 4up3:A, 4up3:B
8 2fdc:A 505 58 0.1029 0.0277 0.2414 2.6
9 6na4:B 448 44 0.1176 0.0357 0.3636 2.8 6na3:A, 6na3:B, 6na3:C, 6na3:D, 6na4:A, 6na4:C, 6na4:D, 6na5:A, 6na5:B, 6na5:C, 6na5:D, 6na6:A, 6na6:B, 6na6:D, 6na6:C, 6owe:A, 6owe:C, 6owe:B, 6owe:D
10 5hrf:A 178 45 0.0882 0.0674 0.2667 3.3 7cpw:A, 7cpw:B, 8e9a:A, 8e9a:B, 5hr9:A, 5hr9:B, 5hrb:A, 5hrd:A, 5hrd:B, 5hrd:C, 5hrd:D, 5hre:A, 5hrf:B, 5hrg:A, 5hrg:B, 5hrh:A, 5hrh:B, 5hri:A, 5hri:B, 5hrk:A, 5hrk:B, 5hrl:A, 5hrl:B, 8ild:A, 8ild:B, 8ile:B, 8ile:A, 8ilf:B, 8ilf:A, 8ilg:A, 8ilg:B, 8ilh:B, 8ilh:A, 8ilh:C, 8ilh:D, 8ili:A, 8ili:B, 8ili:C, 8ili:D, 2m2u:A, 2m2w:A, 5xm8:A, 5xm8:B, 5xm8:C, 5xm8:D, 5xm9:A, 5xm9:B, 5xm9:C, 5xm9:D, 5xma:A, 5xma:B
11 8fl2:NU 833 63 0.1544 0.0252 0.3333 4.1 8fl3:NU, 8fl4:NU
12 2gbx:D 170 40 0.1029 0.0824 0.3500 5.4
13 5xq3:A 901 62 0.1250 0.0189 0.2742 6.9 5xq3:B, 5xqg:A, 5xqg:B, 5xqg:C, 5xqg:D, 5xqg:E, 5xqg:F, 5xqg:G, 5xqg:H, 5xqj:A, 5xqj:B, 5xqj:C, 5xqj:D, 5xqj:E, 5xqj:F, 5xqj:G, 5xqj:H, 5xqo:A, 5xqo:B
14 4xup:A 330 72 0.1618 0.0667 0.3056 7.4 4xun:A, 4xun:B, 4xun:C, 4xuo:A, 4xuo:B, 4xup:B, 4xup:C, 4xup:D, 4xup:E, 4xup:F, 4xuq:A, 4xuq:B, 4xuq:C, 4xur:A, 4xur:B, 4xur:C, 4xut:A, 4xut:B, 4xut:C
15 3ayx:A 595 42 0.1029 0.0235 0.3333 8.5 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
16 3o5b:A 479 39 0.0809 0.0230 0.2821 9.2 3o5b:B, 3o80:A, 3o8m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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