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BioLiP
>protein
MKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSG
WVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPDETKYVFEELEQTLKHLI

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hli:A 146 141 1.0000 0.9315 0.9645 1.16e-96 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
2 1z9c:C 138 113 0.3529 0.3478 0.4248 5.63e-26 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
3 3hsr:B 133 124 0.3088 0.3158 0.3387 6.16e-15 3hsr:A, 3hsr:C, 3hsr:D
4 5x80:A 137 99 0.1912 0.1898 0.2626 1.95e-06 5hso:A, 5hso:C, 5hso:D, 5hso:B, 5x7z:A, 5x80:B
5 3zpl:E 160 97 0.2059 0.1750 0.2887 7.83e-06 3zpl:A, 3zpl:B, 3zpl:F
6 4em0:B 150 102 0.2132 0.1933 0.2843 1.37e-05
7 7kfq:A 141 126 0.2279 0.2199 0.2460 1.82e-05 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
8 5h3r:A 141 126 0.2647 0.2553 0.2857 1.96e-05 5h3r:B
9 2fbh:A 137 114 0.2279 0.2263 0.2719 2.79e-04
10 6c2s:A 142 69 0.1838 0.1761 0.3623 6.79e-04 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
11 5aip:A 141 84 0.1691 0.1631 0.2738 8.98e-04 5aip:B
12 4fx4:B 133 98 0.1912 0.1955 0.2653 0.002 4fx4:A
13 6pcp:A 140 78 0.1103 0.1071 0.1923 0.003 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F
14 2frh:A 127 78 0.1544 0.1654 0.2692 0.007 2frh:B
15 3ech:B 135 75 0.1985 0.2000 0.3600 0.021 3ech:A
16 5cyv:B 143 102 0.1765 0.1678 0.2353 0.028 5cyv:A, 3fm5:C
17 6jbx:A 146 50 0.1103 0.1027 0.3000 0.093 6jbx:B
18 4rgu:B 144 92 0.1176 0.1111 0.1739 0.19 5bmz:A, 5bmz:B, 5bmz:C, 5bmz:D, 4rgs:A, 4rgs:B, 4rgu:A
19 5yhx:N 146 59 0.1250 0.1164 0.2881 0.30 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
20 6fi9:A 144 67 0.1397 0.1319 0.2836 0.31 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
21 3q5f:A 141 84 0.1397 0.1348 0.2262 0.41 3q5f:B
22 7el3:A 138 76 0.1176 0.1159 0.2105 0.51 7el3:B
23 3gfi:A 143 133 0.1985 0.1888 0.2030 0.54 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
24 4aij:B 142 97 0.1691 0.1620 0.2371 0.57 4aij:A, 4aik:A
25 7dvr:A 147 59 0.1250 0.1156 0.2881 0.79 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
26 6wkr:C 606 43 0.1176 0.0264 0.3721 1.6 4mi0:A, 4mi5:A, 8t9g:I
27 8tas:E 570 43 0.1176 0.0281 0.3721 1.6 8tb9:E
28 8t9g:C 536 43 0.1176 0.0299 0.3721 1.6 8fyh:A, 8fyh:G
29 7uci:A 686 41 0.0956 0.0190 0.3171 3.6 7uci:B
30 4jxy:A 311 51 0.1103 0.0482 0.2941 3.7
31 7ucl:A 616 41 0.0956 0.0211 0.3171 3.7 7ucl:B
32 5odc:A 653 49 0.1176 0.0245 0.3265 5.3 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
33 3irm:A 520 24 0.0809 0.0212 0.4583 7.2 3cl9:A, 3clb:A, 3clb:B, 3clb:C, 3clb:D, 2h2q:A, 2h2q:B, 3hbb:A, 3hbb:B, 3hbb:C, 3hbb:D, 3inv:A, 3inv:B, 3irm:B, 3irm:C, 3irm:D, 3irn:A, 3irn:B, 3irn:C, 3irn:D, 3iro:A, 3iro:B, 3iro:C, 3iro:D, 3kjs:A, 3kjs:B, 3kjs:C, 3kjs:D, 5t7o:A, 5t7o:B, 5t7o:C, 5t7o:D
34 2wad:C 607 73 0.1618 0.0362 0.3014 7.5 2wad:A, 2wae:A
35 3f8f:A 114 55 0.1103 0.1316 0.2727 8.2 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
36 5ij7:B 469 33 0.1029 0.0299 0.4242 8.4 6b3w:A, 6b3w:B, 6c23:K, 6c24:K, 5ij7:A, 5ij8:A, 5ij8:B, 4w2r:A, 4w2r:B
37 2xfg:A 446 28 0.0809 0.0247 0.3929 9.3
38 2pk0:A 247 43 0.1029 0.0567 0.3256 9.4 2pk0:B, 2pk0:C, 2pk0:D
39 5hyn:A 581 31 0.1029 0.0241 0.4516 9.4 5hyn:F, 5hyn:K, 5hyn:Q, 5ls6:A, 5ls6:G, 5ls6:J, 5ls6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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