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BioLiP
>protein
MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSL

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1lbg:A 357 62 1.0000 0.1737 1.0000 1.20e-37 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
2 3oqo:A 333 58 0.4839 0.0901 0.5172 9.01e-11 3oqm:A, 3oqm:C, 3oqn:A, 3oqn:C, 3oqo:C
3 1rzr:G 332 58 0.4839 0.0904 0.5172 2.74e-10 2jcg:A, 2nzu:G, 2nzv:G, 1rzr:C, 1rzr:A, 1rzr:D, 1sxg:B, 1zvv:A, 1zvv:B, 1zvv:G
4 5ysz:A 327 53 0.4355 0.0826 0.5094 2.20e-09
5 1jft:A 340 52 0.4032 0.0735 0.4808 1.44e-07 1bdh:A, 1bdi:A, 1jfs:A, 1jh9:A, 1pnr:A, 2pua:A, 2pub:A, 2puc:A, 2pud:A, 2pue:A, 2puf:A, 2pug:A, 1qp0:A, 1qp4:A, 1qp7:A, 1qpz:A, 1qqa:A, 1qqb:A, 1vpw:A, 1wet:A, 1zay:A
6 7ce1:T 292 52 0.2903 0.0616 0.3462 2.20e-04
7 7ce1:K 333 52 0.2903 0.0541 0.3462 2.42e-04 7cdx:A, 7cdx:B, 7ce1:A, 7ce1:B, 7ce1:C, 7ce1:D, 7ce1:G, 7ce1:H, 7ce1:L, 7ce1:O, 7ce1:P
8 7ce1:S 259 52 0.2903 0.0695 0.3462 2.47e-04
9 3tw1:A 222 43 0.2258 0.0631 0.3256 0.10
10 4i2o:A 198 24 0.1452 0.0455 0.3750 0.25 4i2o:B
11 5ui5:V 323 25 0.1774 0.0341 0.4400 0.95 2o8k:A, 2o9l:A, 5ui5:I
12 5nss:M 388 26 0.1774 0.0284 0.4231 1.2 6gfw:M, 6gh5:M, 5nsr:M
13 6gh6:M 315 26 0.1774 0.0349 0.4231 1.4
14 7qv9:M 417 26 0.1774 0.0264 0.4231 1.5 8f1i:M, 8f1j:M, 8f1k:M, 7qwp:M, 7qxi:M, 8re4:M, 8rea:M
15 8reb:M 350 26 0.1774 0.0314 0.4231 2.1 8rec:M, 8red:M, 8ree:M
16 6sga:Fd 96 28 0.1613 0.1042 0.3571 2.3 7pua:Fd, 6sgb:Fd
17 3wnb:A 361 17 0.1613 0.0277 0.5882 3.9 3wnc:A
18 6iub:A 264 26 0.1290 0.0303 0.3077 4.8 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
19 2rjb:A 418 59 0.2581 0.0383 0.2712 5.3 2rjb:B, 2rjb:C
20 2iie:A 204 46 0.2258 0.0686 0.3043 6.5 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
21 6qex:A 1182 54 0.2419 0.0127 0.2778 7.9 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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