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BioLiP
>protein
MKPVSLSYRCPCRFFESHIARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2nwg:A 68 68 1.0000 1.0000 1.0000 3.90e-46 2nwg:B, 4uai:A
2 1ilp:A 71 46 0.2500 0.2394 0.3696 9.63e-05 1ilq:A, 6xmn:A
3 6fgp:B 68 45 0.2206 0.2206 0.3333 6.31e-04 1b3a:B, 1b3a:A, 5coy:A, 5dnf:C, 5dnf:D, 5dnf:I, 5dnf:A, 5dnf:F, 5dnf:G, 5dnf:H, 1u4l:A, 1u4m:A
4 2ra4:B 65 36 0.1618 0.1692 0.3056 0.009
5 7f1t:A 423 32 0.1765 0.0284 0.3750 0.033 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
6 4r8i:A 68 17 0.1029 0.1029 0.4118 0.40
7 2mpm:A 74 62 0.1912 0.1757 0.2097 1.4
8 2iq7:E 339 28 0.1765 0.0354 0.4286 1.5
9 4r9w:B 64 62 0.2353 0.2500 0.2581 3.8
10 5vo0:D 159 37 0.1618 0.0692 0.2973 4.1 5vnz:A, 5vnz:D, 5vo0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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