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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQL
AEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2c0a:B 214 213 1.0000 0.9953 1.0000 8.68e-155 2c0a:C, 1eua:A, 1eua:B, 1eua:C, 1wau:A, 1wbh:B, 1wbh:C
2 6ovi:A 210 200 0.4883 0.4952 0.5200 6.13e-73 6ovi:B, 6ovi:C
3 1mxs:A 216 208 0.4413 0.4352 0.4519 9.73e-67
4 5xsf:A 209 199 0.4930 0.5024 0.5276 3.25e-66
5 3vcr:A 216 203 0.4789 0.4722 0.5025 8.25e-66 3vcr:B
6 1wa3:D 203 204 0.3146 0.3300 0.3284 1.07e-21 1wa3:A, 1wa3:B, 1wa3:C, 1wa3:E, 1wa3:F
7 2v82:A 205 161 0.1878 0.1951 0.2484 1.27e-10
8 7ob6:A 222 62 0.0939 0.0901 0.3226 0.039
9 2a1y:A 301 50 0.0798 0.0565 0.3400 0.30
10 3d1l:B 259 99 0.1362 0.1120 0.2929 0.35
11 1btm:A 251 47 0.0798 0.0677 0.3617 5.0 1btm:B, 2btm:A, 2btm:B
12 7ocn:A 690 80 0.1127 0.0348 0.3000 6.7 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B
13 3nx3:A 388 34 0.0704 0.0387 0.4412 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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