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BioLiP
>protein
MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKFGDGRIFVI
PVEKSVKIRTGDEEVAAAH

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ta0:C 99 99 1.0000 1.0000 1.0000 1.49e-64 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
2 3ta1:D 115 113 1.0000 0.8609 0.8761 1.76e-60 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
3 2j9d:B 103 94 0.5859 0.5631 0.6170 2.29e-33 2j9d:H, 2j9d:K
4 3ncr:C 116 106 0.6061 0.5172 0.5660 8.54e-31 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
5 4c3k:D 101 97 0.5354 0.5248 0.5464 1.66e-30 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
6 2j9e:B 119 107 0.5859 0.4874 0.5421 2.18e-30 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
7 8wm7:G 94 94 0.5354 0.5638 0.5638 4.89e-30
8 7p4v:A 113 106 0.5455 0.4779 0.5094 4.92e-30
9 3n5b:A 112 111 0.5556 0.4911 0.4955 2.51e-27 8wm7:E
10 2eg2:A 95 92 0.5354 0.5579 0.5761 1.06e-26
11 5l9n:A 92 94 0.5051 0.5435 0.5319 1.21e-26
12 3lf0:A 99 91 0.4545 0.4545 0.4945 1.39e-26
13 7p50:A 121 104 0.4949 0.4050 0.4712 3.01e-26 7p50:B, 7p50:C
14 2xbp:A 113 111 0.5354 0.4690 0.4775 3.07e-26 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
15 4cnz:A 100 99 0.5051 0.5000 0.5051 3.70e-26 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
16 1ul3:B 94 97 0.5253 0.5532 0.5361 6.73e-26 1ul3:C
17 1v3s:A 97 97 0.4949 0.5052 0.5052 7.64e-26 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
18 4cnz:E 112 111 0.5152 0.4554 0.4595 2.54e-25 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
19 3lf0:B 112 105 0.4646 0.4107 0.4381 3.34e-25 3lf0:C
20 2gnk:A 95 97 0.4646 0.4842 0.4742 8.37e-25
21 2ns1:B 113 111 0.4747 0.4159 0.4234 7.77e-24 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
22 6yc7:A 105 104 0.4545 0.4286 0.4327 2.29e-23 6yc7:B, 6yc7:E, 6yc7:C
23 4ozl:A 104 91 0.4848 0.4615 0.5275 3.45e-22 4ozn:B
24 6yc7:F 94 97 0.4242 0.4468 0.4330 5.13e-22
25 4ozn:A 116 102 0.4949 0.4224 0.4804 5.69e-21 4ozj:A, 4ozn:C
26 2o66:B 108 87 0.3636 0.3333 0.4138 5.39e-18 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
27 2rd5:D 126 102 0.3838 0.3016 0.3725 1.03e-16 2rd5:C
28 7o4x:A 103 94 0.3838 0.3689 0.4043 1.11e-15
29 4usj:C 142 107 0.4141 0.2887 0.3832 1.97e-14 4usi:A, 4usi:C, 4usi:B, 4usj:D
30 4rx6:B 115 101 0.3434 0.2957 0.3366 6.44e-12 4r25:A, 4rx6:A, 4rx6:D
31 2zt5:A 530 52 0.1818 0.0340 0.3462 0.041 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
32 4yd9:A 1656 51 0.1515 0.0091 0.2941 0.94 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
33 5e6m:B 506 35 0.1313 0.0257 0.3714 1.8
34 4z0g:B 390 40 0.1313 0.0333 0.3250 1.9 4xtd:A, 4xtd:B, 4xti:A, 4xti:B, 4z0g:A
35 8hvr:D 1259 39 0.1515 0.0119 0.3846 2.4 8dy7:D, 8dy9:D, 8jke:D, 8k60:D, 7vpd:D, 7vpz:D, 7x74:D, 7x75:D, 7x76:D
36 4qei:A 562 36 0.1313 0.0231 0.3611 3.2
37 5e6m:A 519 36 0.1313 0.0250 0.3611 3.4 4kr2:A, 4kr3:A
38 8uha:V 550 26 0.1212 0.0218 0.4615 6.0 8uhd:V
39 4v1t:B 753 51 0.1616 0.0212 0.3137 6.3 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
40 7plm:A 1177 57 0.1818 0.0153 0.3158 7.1 7plm:B
41 4bs9:A 691 50 0.1616 0.0232 0.3200 7.2
42 7jil:j 159 24 0.0909 0.0566 0.3750 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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