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BioLiP
>protein
MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKFGDGRIFVI
PVEKSVKIRTGDEEVAAA

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ta0:C 99 98 1.0000 0.9899 1.0000 4.03e-63 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
2 3ta1:D 115 112 1.0000 0.8522 0.8750 3.23e-59 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
3 2j9d:B 103 94 0.5918 0.5631 0.6170 2.18e-33 2j9d:H, 2j9d:K
4 3ncr:C 116 106 0.6122 0.5172 0.5660 9.06e-31 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
5 4c3k:D 101 97 0.5408 0.5248 0.5464 2.17e-30 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
6 2j9e:B 119 107 0.5918 0.4874 0.5421 2.24e-30 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
7 8wm7:G 94 94 0.5408 0.5638 0.5638 4.65e-30
8 7p4v:A 113 106 0.5510 0.4779 0.5094 5.76e-30
9 3n5b:A 112 111 0.5612 0.4911 0.4955 3.03e-27 8wm7:E
10 2eg2:A 95 92 0.5408 0.5579 0.5761 1.34e-26
11 5l9n:A 92 94 0.5102 0.5435 0.5319 1.36e-26
12 3lf0:A 99 91 0.4592 0.4545 0.4945 1.48e-26
13 7p50:A 121 104 0.5000 0.4050 0.4712 3.20e-26 7p50:B, 7p50:C
14 2xbp:A 113 111 0.5408 0.4690 0.4775 3.30e-26 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
15 4cnz:A 100 99 0.5102 0.5000 0.5051 3.45e-26 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
16 1v3s:A 97 97 0.5000 0.5052 0.5052 6.25e-26 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
17 1ul3:B 94 97 0.5306 0.5532 0.5361 8.90e-26 1ul3:C
18 4cnz:E 112 111 0.5204 0.4554 0.4595 3.29e-25 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
19 3lf0:B 112 105 0.4694 0.4107 0.4381 4.22e-25 3lf0:C
20 2gnk:A 95 97 0.4694 0.4842 0.4742 8.15e-25
21 2ns1:B 113 111 0.4796 0.4159 0.4234 8.72e-24 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
22 6yc7:A 105 104 0.4592 0.4286 0.4327 2.60e-23 6yc7:B, 6yc7:E, 6yc7:C
23 4ozl:A 104 91 0.4898 0.4615 0.5275 2.70e-22 4ozn:B
24 6yc7:F 94 97 0.4286 0.4468 0.4330 5.22e-22
25 4ozn:A 116 102 0.5000 0.4224 0.4804 4.27e-21 4ozj:A, 4ozn:C
26 2o66:B 108 87 0.3673 0.3333 0.4138 5.50e-18 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
27 2rd5:D 126 102 0.3878 0.3016 0.3725 1.11e-16 2rd5:C
28 7o4x:A 103 94 0.3878 0.3689 0.4043 9.64e-16
29 4usj:C 142 107 0.4184 0.2887 0.3832 1.75e-14 4usi:A, 4usi:C, 4usi:B, 4usj:D
30 4rx6:B 115 101 0.3469 0.2957 0.3366 5.90e-12 4r25:A, 4rx6:A, 4rx6:D
31 2zt5:A 530 52 0.1837 0.0340 0.3462 0.040 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
32 4yd9:A 1656 51 0.1531 0.0091 0.2941 0.91 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
33 5e6m:B 506 35 0.1327 0.0257 0.3714 1.7
34 4z0g:B 390 40 0.1327 0.0333 0.3250 2.1 4xtd:A, 4xtd:B, 4xti:A, 4xti:B, 4z0g:A
35 4qei:A 562 36 0.1327 0.0231 0.3611 2.6
36 5e6m:A 519 36 0.1327 0.0250 0.3611 2.7 4kr2:A, 4kr3:A
37 8hvr:D 1259 39 0.1531 0.0119 0.3846 2.8 8dy7:D, 8dy9:D, 8jke:D, 8k60:D, 7vpd:D, 7vpz:D, 7x74:D, 7x75:D, 7x76:D
38 8uha:V 550 26 0.1224 0.0218 0.4615 5.9 8uhd:V
39 4v1t:B 753 51 0.1633 0.0212 0.3137 6.1 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
40 4bs9:A 691 50 0.1633 0.0232 0.3200 7.1
41 7jil:j 159 28 0.1020 0.0629 0.3571 7.3
42 7plm:A 1177 57 0.1837 0.0153 0.3158 7.4 7plm:B
43 4ail:C 750 47 0.1429 0.0187 0.2979 7.8 2jgu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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