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BioLiP
>protein
MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKFGDGRIFVIP
VEKSVKIRTGDEEVAAA

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ta0:C 99 98 1.0000 0.9798 0.9898 8.20e-61 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
2 3ta1:D 115 112 1.0000 0.8435 0.8661 1.12e-58 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
3 2j9d:B 103 94 0.5876 0.5534 0.6064 5.96e-32 2j9d:H, 2j9d:K
4 3ncr:C 116 106 0.5979 0.5000 0.5472 6.44e-30 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
5 2j9e:B 119 107 0.5876 0.4790 0.5327 8.45e-30 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
6 7p4v:A 113 106 0.5464 0.4690 0.5000 1.95e-29
7 8wm7:G 94 94 0.5464 0.5638 0.5638 5.03e-29
8 3lf0:A 99 90 0.4639 0.4545 0.5000 1.91e-28
9 4c3k:D 101 97 0.5361 0.5149 0.5361 4.64e-28 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
10 3n5b:A 112 111 0.5567 0.4821 0.4865 1.18e-26 8wm7:E
11 2eg2:A 95 91 0.5464 0.5579 0.5824 1.50e-26
12 5l9n:A 92 93 0.5155 0.5435 0.5376 1.54e-26
13 4cnz:A 100 99 0.5155 0.5000 0.5051 2.21e-26 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
14 1ul3:B 94 96 0.5361 0.5532 0.5417 6.10e-26 1ul3:C
15 2xbp:A 113 111 0.5361 0.4602 0.4685 1.53e-25 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
16 7p50:A 121 104 0.4948 0.3967 0.4615 2.61e-25 7p50:B, 7p50:C
17 1v3s:A 97 97 0.4948 0.4948 0.4948 6.10e-25 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
18 2gnk:A 95 96 0.4742 0.4842 0.4792 6.59e-25
19 4cnz:E 112 111 0.5155 0.4464 0.4505 1.40e-24 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
20 3lf0:B 112 105 0.4639 0.4018 0.4286 1.59e-24 3lf0:C
21 4ozl:A 104 90 0.4948 0.4615 0.5333 3.61e-24 4ozn:B
22 2ns1:B 113 111 0.4742 0.4071 0.4144 4.81e-23 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
23 6yc7:A 105 104 0.4536 0.4190 0.4231 1.13e-22 6yc7:B, 6yc7:E, 6yc7:C
24 6yc7:F 94 96 0.4330 0.4468 0.4375 3.59e-22
25 4ozn:A 116 102 0.4948 0.4138 0.4706 1.81e-20 4ozj:A, 4ozn:C
26 2o66:B 108 86 0.3711 0.3333 0.4186 1.71e-18 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
27 2rd5:D 126 102 0.3814 0.2937 0.3627 1.31e-16 2rd5:C
28 7o4x:A 103 94 0.3918 0.3689 0.4043 2.73e-15
29 4usj:C 142 107 0.4227 0.2887 0.3832 1.50e-14 4usi:A, 4usi:C, 4usi:B, 4usj:D
30 4rx6:B 115 101 0.3402 0.2870 0.3267 2.50e-11 4r25:A, 4rx6:A, 4rx6:D
31 2zt5:A 530 52 0.1856 0.0340 0.3462 0.039 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
32 4yd9:A 1656 51 0.1546 0.0091 0.2941 0.89 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
33 1ahp:A 796 76 0.2165 0.0264 0.2763 1.4 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A
34 5e6m:B 506 63 0.1959 0.0375 0.3016 1.7
35 8uha:V 550 36 0.1649 0.0291 0.4444 1.7 8uhd:V
36 4qei:A 562 36 0.1340 0.0231 0.3611 2.3
37 5e6m:A 519 36 0.1340 0.0250 0.3611 2.5 4kr2:A, 4kr3:A
38 1kyt:A 225 36 0.1546 0.0667 0.4167 5.8 1kyt:B, 1l6r:A, 1l6r:B
39 7jil:j 159 28 0.1031 0.0629 0.3571 7.0
40 2nra:C 252 32 0.1546 0.0595 0.4688 7.7
41 7bye:F 98 56 0.1753 0.1735 0.3036 8.1
42 3hdi:A 414 48 0.1753 0.0411 0.3542 9.2 3hdi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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