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BioLiP
>protein
MKMSDMHSSASSQEYMAGMKNMHEKMMAAVNESNPDKAFAKGMIAHHEGAIAMAETELKYGKDPEMRKLAQDIIKAQKGE
IEQMNKWLDSHK

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vw1:B 92 92 1.0000 1.0000 1.0000 2.79e-63 7vw1:A, 7vw2:B
2 5ffc:A 148 60 0.2717 0.1689 0.4167 1.61e-09 5fej:A, 5fej:B, 5fej:C, 5fej:D, 5ffd:A, 5ffe:A, 5ffe:B
3 5ffc:A 148 52 0.2500 0.1554 0.4423 1.79e-09 5fej:A, 5fej:B, 5fej:C, 5fej:D, 5ffd:A, 5ffe:A, 5ffe:B
4 1yix:A 265 38 0.1304 0.0453 0.3158 5.8 1yix:B
5 2zwa:B 683 52 0.1630 0.0220 0.2885 7.1 2zw9:A, 2zw9:B, 2zwa:A
6 5t1p:D 328 36 0.1413 0.0396 0.3611 7.7 5t1p:A, 5t1p:B, 5t1p:C
7 5fsg:A 661 19 0.1087 0.0151 0.5263 8.4
8 6i2n:D 336 19 0.1087 0.0298 0.5263 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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