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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVG

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j6x:B 152 151 1.0000 0.9934 1.0000 2.85e-114 1j6x:A
2 1ie0:A 156 149 0.4702 0.4551 0.4765 1.88e-42 2fqo:A, 2fqt:A, 1j98:A, 1jqw:A, 1jvi:A, 1ycl:A
3 1vh2:A 152 147 0.4238 0.4211 0.4354 1.25e-39 1inn:A, 1inn:B, 1j6v:A, 1vgx:A, 1vgx:B, 1vje:A, 1vje:B
4 4xch:A 149 137 0.3179 0.3221 0.3504 1.60e-32 4xch:B, 4xch:C, 4xch:D
5 5e68:B 172 146 0.3642 0.3198 0.3767 5.87e-32 5e68:A, 5v2w:A, 5v2w:B
6 1j6w:A 161 141 0.3709 0.3478 0.3972 8.79e-32 1j6w:B, 1joe:A, 1joe:B, 1joe:C, 1joe:D
7 8sw0:A 864 49 0.1192 0.0208 0.3673 0.16 8sw1:A
8 6ncf:B 676 48 0.1060 0.0237 0.3333 0.40 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
9 7ttj:A 643 48 0.1060 0.0249 0.3333 0.43 7ttl:B, 3v99:A
10 7ttl:C 617 48 0.1060 0.0259 0.3333 0.44 6n2w:A, 6n2w:B
11 3v99:B 639 48 0.1060 0.0250 0.3333 0.47
12 7ttj:B 590 48 0.1060 0.0271 0.3333 0.53
13 6ei9:A 306 135 0.1788 0.0882 0.2000 2.4 6ei9:B
14 5tka:A 167 49 0.1126 0.1018 0.3469 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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