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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKMNPIVELFIKDFTKEVMEENAAIFAGAGLSMSVGYVSWAKLLEPIAQEIGLDVNKENDLVSLAQYYCNENQGNRGRIN
QIILDEFSRKVDLTENHKILARLPIHTYWTTAYDRLIEKALEEENKIADVKYTVKQLATTKVKRDAVVYKMHGDVEHPSE
AVLIKDDYEKYSIKMDPYIKALSGDLVSKTFLFVGFSFTDPNLDYILSRVRSAYERDQRRHYCLIKKEERRPDELEADFE
YRVRKQELFISDLSRFNIKTIVLNNYNEITEILQRIENNIKTKTVFLSGSAVEYNHWETEHAEQFIHQLSKELIRKDFNI
VSGFGLGVGSFVINGVLEELYMTIDDDRLILRPFPQGKKGEEQWDKYRRDMITRTGVSIFLYGNKIDKGQVVKAKGVQSE
FNISFEQNNYVVPVGATGYIAKDLWNKVNEEFETYYPGADARMKKLFGELNNEALSIEELINTIIEFVEILSN

The query sequence (length=473) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bto:A 473 473 1.0000 1.0000 1.0000 0.0 8bto:B, 8bto:C, 8bto:D, 8bto:E, 8bto:F, 8bto:G, 8bto:H, 8bto:I, 8bto:J, 8bto:K, 8bto:L, 8btp:A, 8btp:B, 8btp:C, 8btp:D, 8btp:E, 8btp:F, 8btp:G, 8btp:H, 8btp:I, 8btp:J, 8btp:K, 8btp:L, 7uxs:B, 7uxs:A
2 8zc9:A 1000 219 0.1332 0.0630 0.2877 1.32e-06 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
3 8zc9:B 971 219 0.1332 0.0649 0.2877 1.40e-06 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
4 5gne:A 366 64 0.0465 0.0601 0.3438 1.9 5gne:B
5 4pee:C 446 158 0.0761 0.0807 0.2278 5.9 5hdr:A, 5hdr:B, 5hdr:C, 5hdr:D, 6hzy:A, 6hzy:B, 5i5r:A, 5i5r:B, 5i5r:C, 5i5r:D, 4j28:A, 4j28:B, 4jfs:A, 4jfs:B, 4jft:A, 4jft:B, 4jfu:A, 4jfu:B, 4jfv:A, 4jfv:B, 4jfv:C, 4jfv:D, 4jfw:A, 4jfw:B, 4jfw:C, 4jfw:D, 4jl1:A, 4jl1:B, 4jl2:A, 4jl2:B, 4pcs:A, 4pcs:B, 4pcs:C, 4pcs:D, 4pct:A, 4pct:B, 4pct:C, 4pct:D, 4pee:A, 4pee:B, 4pee:D, 4wsj:A, 4wsj:B, 4wsj:C, 4wsj:D, 4wsk:A, 4wsk:B, 4wsk:C, 2wvs:A, 2wvs:B, 2wvs:C, 2wvs:D, 2wvt:A, 2wvt:B, 2wvu:A, 2wvu:B, 2wvu:C, 2wvu:D, 2xib:A, 2xib:B, 2xib:C, 2xib:D, 2xii:A, 2xii:B
6 1r4w:A 221 74 0.0381 0.0814 0.2432 6.4 1r4w:B, 1r4w:C, 1r4w:D
7 8rf0:A 2780 31 0.0317 0.0054 0.4839 7.4 8rfe:A, 8rfg:A
8 2r94:A 286 48 0.0296 0.0490 0.2917 9.0 2r94:D, 2r94:B, 2r94:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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