Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKAN

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3moj:B 75 75 1.0000 1.0000 1.0000 2.63e-48
2 7pmq:C 458 69 0.2800 0.0459 0.3043 3.05e-04 7pli:A, 7pli:B, 7pli:J, 7pli:E, 7pli:F, 7pli:I, 7pmm:A, 7pmm:B, 7pmq:D, 7pmq:A, 7pmq:B
3 8qhe:A 284 31 0.1467 0.0387 0.3548 0.69 6sle:A, 6sle:C, 6sle:H, 6sle:D, 6sle:E, 6sle:F, 6sle:G
4 3was:A 389 38 0.1867 0.0360 0.3684 1.0 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
5 8blw:B 626 42 0.2000 0.0240 0.3571 1.1 8ptd:A, 8ptf:A
6 2qw5:A 327 36 0.1733 0.0398 0.3611 2.7 2qw5:B
7 8wi0:A 1220 32 0.1600 0.0098 0.3750 5.5 8kci:A, 8wi2:A, 8wi5:A
8 5aka:N 127 40 0.1600 0.0945 0.3000 6.1 8a3l:m, 7abz:N, 7ac7:N, 7acj:N, 7acr:N, 5ady:N, 5afi:N, 8akn:m, 8am9:m, 8ana:m, 8ap4:m, 9ax7:m, 9ax8:N, 8aye:m, 8b0x:m, 7b5k:N, 8b7y:V, 3bbx:N, 8bf7:K, 8bge:K, 8bgh:K, 8bh4:K, 8bhj:K, 8bhl:K, 8bhn:K, 8bhp:K, 8bil:K, 8bim:K, 7bl2:N, 7bl3:N, 7bl4:N, 7bl5:N, 7bl6:N, 6bu8:16, 7bv8:O, 6by1:CN, 6by1:DN, 6c4i:O, 8c8x:N, 8c8y:N, 8c8z:N, 8c90:N, 8c91:N, 8c92:N, 8c93:N, 8c94:N, 8c96:N, 8c97:N, 8cam:m, 8ceu:m, 8cgd:m, 8cgk:m, 8cgv:m, 9cg5:m, 9cg6:m, 9cg7:m, 7cpj:N, 4csu:N, 7d6z:N, 7d80:m, 6dnc:R, 8eiu:m, 8ekc:P, 8emm:m, 6enf:N, 6enj:N, 6enu:N, 9fbv:m, 8fiz:BV, 8fto:m, 8fzd:P, 8fze:P, 8fzf:P, 8fzg:P, 8fzh:P, 8fzi:P, 8fzj:P, 8g2u:N, 8g31:N, 8g34:N, 8g38:N, 8g6w:m, 8g6x:m, 8g6y:m, 8g7p:P, 8g7q:P, 8g7r:P, 8g7s:P, 5gad:O, 5gae:O, 5gaf:O, 5gag:O, 5gah:O, 6gbz:N, 6gc0:N, 6gc4:N, 6gc6:N, 6gc7:N, 6gc8:N, 6gwt:N, 6gxm:N, 6gxn:N, 6gxo:N, 6gxp:N, 6h4n:N, 5h5u:O, 6h58:N, 6h58:NN, 6hrm:N, 8hsp:m, 8htz:m, 8hu1:m, 6i0y:N, 6i7v:DO, 6i7v:CO, 8ifb:m, 8ifc:m, 5iqr:N, 5it8:CO, 5it8:DO, 8j1z:m, 2j28:N, 3j5l:N, 5j5b:CO, 5j5b:DO, 3j7z:N, 5j7l:CO, 5j7l:DO, 3j8g:N, 5j88:CO, 5j88:DO, 5j8a:CO, 5j8a:DO, 3j9y:N, 3j9z:LJ, 5j91:CO, 5j91:DO, 3ja1:LP, 3jbu:n, 3jbv:n, 3jcd:N, 3jce:N, 3jcj:M, 3jcn:N, 5jc9:CO, 5jc9:DO, 7jss:n, 7jsw:n, 7jsz:n, 5jte:BN, 7jt1:n, 7jt2:n, 7jt3:n, 5ju8:BN, 7k00:m, 7k50:n, 7k51:n, 7k52:n, 7k53:n, 7k54:n, 7k55:n, 5kcr:1R, 5kcs:1R, 5kps:N, 5kpv:M, 5kpw:M, 5kpx:M, 5l3p:R, 6lkq:4, 7lv0:n, 7lvk:V, 5lza:N, 5lzb:N, 5lzc:N, 5lzd:N, 5lze:N, 5lzf:N, 7m5d:N, 5mdv:N, 5mdw:N, 5mdy:N, 5mdz:N, 5mgp:N, 7n1p:LQ, 7n2c:LQ, 7n2u:LQ, 7n2v:LQ, 7n30:LQ, 7n31:LQ, 7nbu:m, 5nco:O, 5np6:l, 7nso:N, 7nsp:N, 7nsq:N, 5nwy:a, 7nwt:N, 7nww:M, 7o19:BN, 7o1a:BN, 7o1c:BN, 5o2r:N, 6o9j:N, 6o9k:N, 7ode:V, 6ofx:n, 6og7:n, 6ogf:n, 6ogg:n, 6ogi:n, 7oif:M, 7oig:M, 7oii:M, 7oiz:m, 7oj0:m, 6om6:N, 6ore:N, 6orl:N, 6osk:N, 6osq:N, 6ost:N, 6ot3:N, 7ot5:M, 7otc:N, 6ouo:N, 8p16:N, 8p17:N, 8p18:N, 7p3k:m, 8peg:q, 8phj:m, 6pj6:V, 7pjs:N, 7pjt:N, 7pju:N, 7pjv:N, 7pjw:N, 7pjx:N, 7pjy:N, 7pjz:N, 8pkl:q, 8pva:m, 7q4k:BN, 8q4f:m, 6q97:N, 6q98:N, 6q9a:N, 8qbt:N, 6qdw:n, 7qg8:a, 7qgh:a, 7qgn:a, 7qgr:a, 8qk7:N, 8qoa:m, 7qq3:V, 6qul:O, 8r6c:m, 8r8m:m, 8rpy:N, 8rpz:N, 8rq0:N, 8rq2:N, 6s0k:O, 7s1g:V, 7s1h:V, 7s1i:V, 7s1j:V, 7s1k:V, 7sa4:N, 7ss9:n, 7ssd:n, 7ssl:n, 7ssn:n, 7sso:n, 7ssw:n, 7st2:n, 7st6:n, 7st7:n, 8syl:P, 6szs:N, 8t5d:N, 8t5h:N, 6tbv:L171, 6tc3:L171, 7tos:L17, 4u1u:BN, 4u1u:DN, 4u1v:BN, 4u1v:DN, 4u20:BN, 4u20:DN, 4u24:BN, 4u24:DN, 4u25:BN, 4u25:DN, 4u26:BN, 4u26:DN, 4u27:BN, 4u27:DN, 5u4i:O, 6u48:CO, 5u9f:16, 5u9g:16, 7ug7:LQ, 7uph:V, 8upo:w, 8upr:w, 8uql:w, 8uqm:w, 8uqp:w, 8ur0:w, 8urh:w, 8uri:w, 8urx:w, 8ury:w, 4uy8:N, 5uyk:16, 5uyl:16, 5uym:16, 5uyn:16, 5uyp:16, 5uyq:16, 4v4h:BN, 4v4h:DN, 4v4q:BN, 4v4q:DN, 4v4v:BL, 4v4w:BL, 4v50:BN, 4v50:DN, 4v52:BN, 4v52:DN, 4v53:BN, 4v53:DN, 4v54:BN, 4v54:DN, 4v55:BN, 4v55:DN, 4v56:BN, 4v56:DN, 4v57:BN, 4v57:DN, 4v5b:AN, 4v5b:CN, 4v5h:BN, 4v5y:BN, 4v5y:DN, 4v64:BN, 4v64:DN, 4v65:BG, 4v66:BG, 4v69:BN, 4v6c:BN, 4v6c:DN, 4v6d:BN, 4v6d:DN, 4v6e:BN, 4v6e:DN, 4v6k:AO, 4v6l:BO, 4v6m:BN, 4v6n:AP, 4v6o:BP, 4v6p:BP, 4v6q:BP, 4v6r:BP, 4v6s:AP, 4v6t:BN, 4v6v:BR, 4v6y:BN, 4v6z:BN, 4v70:BN, 4v71:BN, 4v72:BN, 4v73:BN, 4v74:BN, 4v75:BN, 4v76:BN, 4v77:BN, 4v78:BN, 4v79:BN, 4v7a:BN, 4v7b:BN, 4v7c:BP, 4v7d:AQ, 4v7i:AN, 4v7s:BN, 4v7s:DN, 4v7t:BN, 4v7t:DN, 4v7u:BN, 4v7u:DN, 4v7v:BN, 4v7v:DN, 4v85:BR, 4v89:BR, 4v9c:BN, 4v9c:DN, 4v9d:CN, 4v9d:DN, 4v9o:AN, 4v9o:CN, 4v9o:EN, 4v9o:GN, 4v9p:AN, 4v9p:CN, 4v9p:EN, 4v9p:GN, 8vs9:L17, 8vsa:L17, 6vu3:w, 6vwl:L, 6vwm:L, 6vwn:L, 6vyq:w, 6vyr:w, 6vys:w, 6vyt:w, 6vyu:w, 6vyw:w, 6vyx:w, 6vyy:w, 6vyz:w, 6vz2:w, 6vz3:w, 6vz5:w, 6vz7:w, 6vzj:w, 8w51:O, 5wdt:N, 6wd0:n, 6wd1:n, 6wd2:n, 6wd3:n, 6wd4:n, 6wd5:n, 6wd6:n, 6wd7:n, 6wd8:n, 6wd9:n, 6wda:n, 6wdb:n, 6wdc:n, 6wdd:n, 6wde:n, 6wdf:n, 6wdg:n, 6wdh:n, 6wdi:n, 6wdj:n, 6wdk:n, 6wdl:n, 6wdm:n, 5we4:N, 5we6:N, 4wf1:BN, 4wf1:DN, 5wf0:N, 5wfk:N, 5wfs:N, 6wnt:n, 6wnv:n, 6wnw:n, 4woi:BN, 4woi:CN, 4www:RN, 4www:YN, 6x6t:w, 6x7f:w, 6x7k:w, 6x9q:w, 6xdq:w, 6xdr:w, 6xgf:w, 6xii:w, 6xij:w, 6xz7:N, 6xza:N2, 6xzb:N2, 6y69:N, 7y7c:m, 7y7d:m, 7y7e:m, 7y7f:m, 7y7g:m, 7y7h:m, 4ybb:CO, 4ybb:DO, 7yla:V, 6ys3:n, 6ysr:N, 6yss:N, 6yst:N, 6ysu:N, 7z20:n, 7zod:n, 7zp8:n, 7zq5:n, 7zq6:n, 6ztj:BO, 6ztl:BO, 6ztm:BO, 6ztn:BO, 6zto:BO, 6ztp:BO, 7zta:L171, 6zu1:BO
9 4v9f:L 149 54 0.2000 0.1007 0.2778 7.0 3cc2:L, 3cc4:L, 3cc7:L, 3cce:L, 3ccj:L, 3ccl:L, 3ccm:L, 3ccq:L, 3ccr:L, 3ccs:L, 3ccu:L, 3ccv:L, 3cd6:L, 3cma:L, 3cme:L, 3cpw:K, 3cxc:K, 1ffk:J, 3g4s:L, 3g6e:L, 3g71:L, 3i55:L, 3i56:L, 1jj2:K, 1k73:M, 1k8a:M, 1k9m:M, 1kc8:M, 1kd1:M, 1kqs:K, 1m1k:M, 1m90:M, 1n8r:M, 1nji:M, 2otj:L, 2otl:L, 3ow2:K, 1q7y:M, 1q81:M, 1q82:M, 1q86:M, 2qa4:L, 2qex:L, 1qvf:K, 1qvg:K, 1s72:L, 4v4p:AO, 4v4r:BP, 4v4s:BP, 4v4t:BP, 1vq4:L, 1vq5:L, 1vq6:L, 1vq7:L, 1vq8:L, 1vq9:L, 1vqk:L, 1vql:L, 1vqm:L, 1vqn:L, 1vqo:L, 1vqp:L, 1w2b:K, 1yhq:L, 1yi2:L, 1yij:L, 1yit:L, 1yj9:L, 1yjn:L, 1yjw:L

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218