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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIA
SLQYINIRGNTIRQIILPDSLNLDSLLV

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6j6g:m 119 108 1.0000 0.9076 1.0000 7.40e-74 7b9v:l, 7b9v:h, 6j6g:z, 6j6h:m, 6j6h:z, 6j6n:m, 6j6n:z, 6j6q:m, 6j6q:z, 6n7p:L, 6n7r:L, 6n7x:L, 8w2o:L, 5zwn:b
2 6g90:h 107 108 0.8889 0.8972 0.8889 2.52e-59 6exn:l, 7oqc:h, 7oqe:h
3 5nrl:l 99 108 0.7315 0.7980 0.7315 6.65e-45 6bk8:h, 7dco:m, 6exn:h, 6g90:t, 5gam:h, 5gan:l, 5gan:h, 5gao:l, 5gm6:m, 5gmk:m, 5gmk:z, 5lj3:h, 5lj3:l, 5lj5:h, 5lj5:l, 5mps:h, 5mq0:h, 5nrl:t, 5nrl:h, 7oqb:t, 7oqe:t, 5wsg:m, 5wsg:V, 5y88:f, 5y88:m, 5ylz:f, 5ylz:m, 5zwm:Q, 5zwm:m, 5zwo:Q, 5zwo:m
4 3jb9:F 82 108 0.4444 0.5854 0.4444 2.77e-19 3jb9:f
5 8ro0:c 80 107 0.3981 0.5375 0.4019 1.48e-14 8ro1:c
6 7abg:g 93 107 0.4259 0.4946 0.4299 1.78e-14 7a5p:n, 7abg:n, 7abi:n, 7abi:g, 6ah0:V, 6ahd:b, 7b0y:k, 8c6j:l, 8c6j:c, 8ch6:k, 8ch6:5, 7dvq:c, 7dvq:j, 9fmd:c, 9fmd:j, 8h6e:5b, 8h6e:4b, 8h6j:5b, 8h6j:4b, 8h6k:5b, 8h6l:5b, 8i0p:b, 8i0p:n, 8i0r:b, 8i0r:n, 8i0s:b, 8i0s:n, 8i0t:b, 8i0t:n, 8i0u:b, 8i0u:n, 8i0v:b, 8i0v:n, 8i0w:b, 8i0w:j, 6icz:j, 6id0:j, 6id1:j, 5mqf:g, 5o9z:n, 5o9z:g, 4pjo:C, 4pjo:c, 4pjo:Q, 4pjo:q, 8q7q:a, 8q7v:a, 8q7w:a, 8q7x:a, 8q91:i, 6qdv:l, 6qdv:h, 8qo9:21, 8qo9:51, 8qo9:41, 7qtt:k, 6qw6:41, 6qw6:51, 6qx9:11, 6qx9:51, 6qx9:21, 6qx9:41, 8qxd:21, 8qxd:41, 8qxd:51, 8qzs:51, 8qzs:21, 8r08:11, 8r08:41, 8r08:21, 8r08:51, 8r09:21, 8r09:51, 8r09:41, 8r0a:51, 8r0a:21, 8r0a:41, 8r0b:21, 8r0b:41, 8r0b:51, 8rc0:i, 8rm5:21, 8rm5:51, 8rm5:41, 8ro2:c, 7vpx:h, 7w59:c, 7w59:j, 7w5a:c, 7w5a:j, 7w5b:c, 7w5b:j, 4wzj:C, 4wzj:J, 4wzj:Q, 4wzj:CC, 4wzj:JJ, 4wzj:QQ, 4wzj:CCC, 4wzj:JJJ, 4wzj:QQQ, 4wzj:CCCC, 4wzj:JJJJ, 4wzj:QQQQ, 5xjc:c, 5xjc:j, 8y6o:b, 8y6o:i, 8y6o:p, 8y7e:j, 5yzg:c, 5yzg:j, 5z56:c, 5z56:j, 5z57:c, 5z57:j, 5z58:c, 5z58:j
7 6qw6:62 95 49 0.1852 0.2105 0.4082 1.78e-06 6ahd:q, 8h6e:6a, 8h6j:6a, 8h6k:6a, 8h6l:6a, 6qx9:62
8 5vsu:B 98 97 0.2500 0.2755 0.2784 2.01e-04 6aso:B, 5gan:2, 4m7a:I, 4m7a:B, 4m7d:I, 4m7d:B, 5nrl:a
9 3jb9:D 96 99 0.2315 0.2604 0.2525 5.15e-04 3jb9:Z
10 6ppn:B 94 106 0.2315 0.2660 0.2358 0.001 6ppn:J, 6ppp:B, 6ppp:J, 6ppq:B, 6ppv:B
11 5vsu:C 81 87 0.1944 0.2593 0.2414 0.023 6aso:C, 4c8q:C, 5gan:3, 4m7a:J, 4m7a:C, 4m7d:J, 4m7d:C, 5nrl:3
12 6am0:D 65 34 0.1389 0.2308 0.4412 0.023
13 8ro0:a 81 98 0.2407 0.3210 0.2653 0.028 8ro1:a
14 6ppn:D 88 34 0.1296 0.1591 0.4118 0.096 6ppn:L, 6ppp:D, 6ppp:L, 6ppq:D, 6ppv:D
15 7plb:B 289 64 0.1759 0.0657 0.2969 0.12 7plb:A, 7plc:A, 7plc:D, 7plc:B, 7plc:C, 7pld:A, 7pld:B
16 8c6j:d 84 98 0.2130 0.2738 0.2347 0.13 7a5p:l, 7a5p:a, 7abg:e, 7abg:l, 7abi:l, 6ah0:h, 6ah0:T, 6ahd:g, 6ahd:h, 7b0y:i, 8c6j:n, 8ch6:j, 8ch6:3, 7dvq:h, 7evo:e, 9fmd:h, 9fmd:a, 8h6e:5g, 8h6e:4g, 8h6e:2g, 8h6j:5g, 8h6j:4g, 8h6j:2g, 8h6k:5g, 8h6k:2g, 8h6l:5g, 8h6l:2g, 8hk1:e, 8i0p:g, 8i0p:l, 8i0r:g, 8i0r:l, 8i0s:g, 8i0s:l, 8i0t:g, 8i0t:l, 8i0u:g, 8i0u:l, 8i0v:g, 8i0v:l, 8i0w:g, 8i0w:h, 6id1:a, 5mqf:l, 5o9z:W, 5o9z:e, 4pjo:A, 4pjo:a, 4pjo:O, 4pjo:o, 8q7q:d, 8q7v:d, 8q7w:d, 8q7x:d, 6qdv:n, 6qdv:d, 8qo9:23, 8qo9:53, 8qo9:43, 7qtt:j, 6qw6:43, 6qw6:53, 6qx9:13, 6qx9:53, 6qx9:23, 6qx9:43, 8qxd:23, 8qxd:43, 8qzs:53, 8qzs:23, 8qzs:43, 8r08:13, 8r08:23, 8r08:43, 8r09:23, 8r09:53, 8r09:43, 8r0a:53, 8r0a:23, 8r0a:43, 8r0b:23, 8r0b:43, 8r0b:53, 8rm5:23, 8rm5:43, 8ro2:a, 6v4x:A, 7vpx:e, 7vpx:j, 7w59:a, 7w59:h, 7w5a:a, 7w5a:h, 7w5b:a, 7w5b:h, 4wzj:A, 4wzj:H, 4wzj:O, 4wzj:AA, 4wzj:HH, 4wzj:OO, 4wzj:AAA, 4wzj:HHH, 4wzj:OOO, 4wzj:AAAA, 4wzj:HHHH, 4wzj:OOOO, 5xjc:a, 5xjc:h, 6y53:l, 6y5q:l, 8y6o:d, 8y6o:k, 8y6o:r, 8y7e:h, 5yzg:a, 5yzg:h, 5z56:a, 5z56:h, 5z57:a, 5z57:h, 5z58:a, 5z58:h
17 6aso:D 59 37 0.1296 0.2373 0.3784 0.19
18 6qw6:64 73 97 0.2407 0.3562 0.2680 0.19 6qx9:64
19 6g90:d 93 98 0.2315 0.2688 0.2551 0.19 7b9v:n, 7b9v:d, 6bk8:o, 6bk8:g, 7dco:l, 6exn:n, 6exn:d, 6g90:v, 5gam:d, 5gan:n, 5gan:d, 5gao:n, 5gm6:l, 5gmk:l, 5gmk:y, 6j6g:l, 6j6g:y, 6j6h:l, 6j6h:y, 6j6n:l, 6j6n:y, 6j6q:l, 6j6q:y, 3jcm:J, 3jcm:R, 5lj3:d, 5lj3:n, 5lj5:d, 5lj5:n, 5mps:d, 5mq0:n, 5mq0:d, 6n7p:N, 6n7r:N, 6n7x:N, 5nrl:v, 5nrl:n, 5nrl:d, 7oqb:v, 7oqc:d, 7oqe:d, 7oqe:v, 8w2o:N, 5wsg:l, 5wsg:U, 5y88:e, 5y88:l, 5ylz:e, 5ylz:l, 5zwm:S, 5zwm:d, 5zwm:l, 5zwn:d, 5zwo:d, 5zwo:S
20 5gan:4 74 49 0.1667 0.2432 0.3673 0.22 4m7a:N, 4m7a:G, 4m7d:N, 5nrl:j, 5vsu:D
21 8khq:A 700 33 0.1296 0.0200 0.4242 0.46 8khq:B, 8khq:C, 8khq:D
22 5mkn:d 72 40 0.1204 0.1806 0.3250 0.79 5mki:C, 5mki:D, 5mki:E, 5mki:F, 5mki:G, 5mki:I, 5mki:J, 5mki:K, 5mki:L, 5mkn:A, 5mkn:G, 5mkn:B, 5mkn:C, 5mkn:D, 5mkn:E, 5mkn:F, 5mkn:H, 5mkn:I, 5mkn:J, 5mkn:K, 5mkn:L, 5mkn:M, 5mkn:N, 5mkn:O, 5mkn:P, 5mkn:Q, 5mkn:R, 5mkn:T, 5mkn:U, 5mkn:V, 5mkn:W, 5mkn:X, 5mkn:Y, 5mkn:Z, 5mkn:a, 5mkn:b
23 3swg:A 417 110 0.2500 0.0647 0.2455 1.4 2yvw:A
24 1d3a:A 303 42 0.1204 0.0429 0.3095 1.6 1d3a:B, 1hlp:A, 1hlp:B, 2hlp:A, 1o6z:A, 1o6z:B, 1o6z:C, 1o6z:D, 2x0r:A, 2x0r:B
25 3jb9:I 73 32 0.1389 0.2055 0.4688 1.8 3jb9:n
26 7aj0:A 501 56 0.1481 0.0319 0.2857 2.1 7aj0:B, 7aj0:C, 7aj0:D, 7aj0:E, 7aj0:F
27 3jb9:J 73 36 0.1111 0.1644 0.3333 2.3 3jb9:o
28 4dug:A 506 40 0.1296 0.0277 0.3500 2.5 4dug:B, 4dug:C, 4dug:D, 4dug:E, 4dug:F, 3dvl:A, 3dvl:B, 3dvl:C, 3dvl:D, 3dvl:E, 3dvl:F, 7dxq:A, 7dxq:B, 7dxq:C, 7dxq:E, 7dxq:F, 7dxq:D, 7dy2:A, 7dy2:B, 7dy2:C, 7dy2:E, 7dy2:F, 7dy2:I, 7dy2:K, 7dy2:J, 2gbl:A, 2gbl:B, 2gbl:C, 2gbl:D, 2gbl:E, 2gbl:F, 4ijm:A, 4ijm:B, 4ijm:F, 4ijm:C, 4ijm:D, 4ijm:E, 8jon:A, 8jon:B, 8jon:C, 8jon:D, 8jon:E, 8jon:F, 3jzm:A, 3jzm:B, 3jzm:C, 3jzm:D, 3jzm:E, 3jzm:F, 3k09:A, 3k09:B, 3k09:C, 3k09:D, 3k09:E, 3k09:F, 3k0a:A, 3k0a:B, 3k0a:F, 3k0a:C, 3k0a:D, 3k0a:E, 3k0c:A, 3k0c:B, 3k0c:C, 3k0c:D, 3k0c:E, 3k0c:F, 3k0e:A, 3k0e:B, 3k0e:C, 3k0e:D, 3k0e:E, 3k0e:F, 3k0f:A, 3k0f:B, 3k0f:C, 3k0f:D, 3k0f:E, 3k0f:F, 3s1a:A, 3s1a:B, 3s1a:C, 3s1a:D, 3s1a:E, 3s1a:F, 7s65:A, 7s65:B, 7s65:C, 7s65:D, 7s65:E, 7s65:F, 7s66:A, 7s66:B, 7s66:C, 7s66:D, 7s66:E, 7s66:F, 7s67:A, 7s67:B, 7s67:F, 7s67:C, 7s67:D, 7s67:E, 1tf7:A, 1tf7:B, 1tf7:C, 1tf7:D, 1tf7:E, 1tf7:F, 4tl6:A, 4tl6:B, 4tl6:C, 4tl7:A, 4tl7:B, 4tl7:C, 4tl7:D, 4tl7:E, 4tl7:F, 4tl8:A, 4tl8:B, 4tl8:C, 4tl8:D, 4tl8:E, 4tl8:F, 4tl9:A, 4tl9:B, 4tl9:C, 4tl9:D, 4tl9:E, 4tl9:F, 4tla:A, 4tla:B, 4tla:C, 4tla:D, 4tla:E, 4tla:F, 4tlb:A, 4tlb:B, 4tlb:C, 4tlb:D, 4tlb:E, 4tlb:F, 4tlc:A, 4tlc:B, 4tlc:C, 4tlc:D, 4tlc:E, 4tlc:F, 4tld:A, 4tld:B, 4tld:C, 4tld:D, 4tld:E, 4tld:F, 4tle:A, 4tle:B, 4tle:C, 4tle:D, 4tle:E, 4tle:F, 1u9i:A, 1u9i:B, 1u9i:C, 1u9i:D, 1u9i:E, 1u9i:F, 7v3x:A, 7v3x:B, 7v3x:C, 7v3x:E, 7v3x:F, 7v3x:D, 7v3x:G, 7v3x:H, 7v3x:I, 7v3x:K, 7v3x:L, 7v3x:J, 7v3x:R, 7v3x:M, 7v3x:Q, 7v3x:W, 7x1y:A, 7x1y:B, 7x1y:C, 7x1y:D, 7x1y:E, 7x1y:F, 7x1z:A, 7x1z:B, 7x1z:C, 7x1z:D, 7x1z:E, 7x1z:F, 5yz8:A, 5yz8:B, 5yz8:C, 5yz8:D, 5yz8:E, 5yz8:F
29 7dy1:D 458 40 0.1389 0.0328 0.3750 2.6 7dy1:A, 7dy1:B, 7dy1:C, 7dy1:E, 7dy1:F
30 4o0m:A 494 40 0.1389 0.0304 0.3750 2.6 5jwo:A, 4o0m:B, 4o0m:C
31 7v3x:O 461 40 0.1296 0.0304 0.3500 2.6 7dy2:D, 7dy2:G, 7dy2:H, 7dy2:L, 7dye:A, 7dye:B, 7dyi:A, 7dyi:B, 7dyj:A, 7dyj:B, 7dyk:A, 7dyk:B, 7v3x:N, 7v3x:P, 7v3x:X, 7v3x:S, 7wdc:A, 7wdc:B, 8wv8:A, 8wv8:B, 8wve:A, 8wve:B
32 7v3x:V 437 40 0.1296 0.0320 0.3500 3.0 7v3x:U
33 6i2k:B 245 54 0.1389 0.0612 0.2778 3.3 4aed:B
34 6tfl:A 62 36 0.1019 0.1774 0.3056 4.1 6tfl:B, 6tfl:C, 6tfl:D, 6tfl:E, 6tfl:F, 6tfl:G, 6tfl:H, 6tfl:I, 6tfl:J, 6tfl:K, 6tfl:L, 6tfl:M, 6tfl:N
35 1ys4:A 348 46 0.1296 0.0402 0.3043 7.0 1ys4:B
36 7v3x:T 415 47 0.1389 0.0361 0.3191 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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