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BioLiP
>protein
MKLTDGQIRINHVSSEKKRRELERAIFDELVAVVPDLQPQESRSELIIYLKSLSYLSWLYERNEKLRKQIIAKHE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xq5:A 75 75 1.0000 1.0000 1.0000 1.01e-49
2 1hlo:A 80 67 0.2533 0.2375 0.2836 0.046
3 5eyo:C 88 62 0.2400 0.2045 0.2903 0.27 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
4 5gnj:B 77 47 0.2267 0.2208 0.3617 0.37 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
5 5i50:B 96 58 0.2133 0.1667 0.2759 1.2 5i50:A, 1nkp:A, 1nkp:D
6 3n9m:A 503 36 0.1867 0.0278 0.3889 1.6 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
7 3c4q:A 393 43 0.2000 0.0382 0.3488 4.6 3c4q:B, 3c4v:A, 3c4v:B
8 3tk0:A 126 59 0.2400 0.1429 0.3051 5.8 4ldk:A, 3mbg:A, 3mbg:B, 3mbg:C, 3o55:A, 3u2l:A, 3u2m:A, 3u5s:A
9 6hiv:BY 102 34 0.1733 0.1275 0.3824 6.7 6hix:BY
10 7n6s:C 147 45 0.1733 0.0884 0.2889 7.5 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
11 8fkb:A 424 29 0.1600 0.0283 0.4138 7.6 6cvc:A, 8fjo:A, 8flo:A, 8gdi:A
12 6u05:A 413 44 0.2267 0.0412 0.3864 7.9 6tzm:A, 6tzo:A, 6tzx:A, 6u00:B, 6u03:A, 5u32:A
13 7yeh:A 1020 16 0.1067 0.0078 0.5000 9.8 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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