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BioLiP
>protein
MKLSGGVEWALHCCVVLTAASRPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGKTGGYVLTRPAVEITLLDVVQA
VDGPDPAFVCTEIRQRGPLATPPEKCTKACPIARAMGAAEAAWRASLAATTIADLVATVDDESGPDALPGVGAWLIEGLG
HHH

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hsd:A 166 163 1.0000 0.9819 1.0000 3.04e-116 6hsd:C, 6hsd:B, 6hsd:D, 6hse:A, 6hse:C, 6hse:B, 6hse:D, 6hsm:A, 6hsm:D, 6hsm:B, 6hsm:C, 6hsm:E, 6hsm:G, 6hsm:F, 6hsm:H, 6y42:A, 6y42:B, 6y45:A, 6y45:C, 6y45:B, 6y45:D
2 4chu:B 127 68 0.1718 0.2205 0.4118 2.48e-09
3 4hf1:A 129 84 0.1902 0.2403 0.3690 3.67e-09 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
4 4cic:A 138 62 0.1411 0.1667 0.3710 1.28e-07 4cic:B
5 7b0c:A 144 140 0.2209 0.2500 0.2571 6.48e-05 7b0c:B, 5n07:A
6 8irk:A 379 80 0.1411 0.0607 0.2875 1.0 8irk:B, 8irk:C, 8irk:D, 8iry:A, 8iry:B, 8iry:C, 8iry:D, 8irz:A, 8irz:B, 8is0:A, 8is0:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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