Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLSGGVEWALHCCVVLTAASRPVPAARLAELADVSPSYLAKQMQALSRAGLVRSVQGKTGGYVLTRPAVEITLLDVVQA
VDGPDPAFVCTEIRQRGPLATPPEKCTKACPIARAMGAAEAAWRASLAATTIADLVATVDDESGPDALPGVGAWLIE

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hsd:A 166 157 0.9936 0.9398 0.9936 5.86e-110 6hsd:C, 6hsd:B, 6hsd:D, 6hse:A, 6hse:C, 6hse:B, 6hse:D, 6hsm:A, 6hsm:D, 6hsm:B, 6hsm:C, 6hsm:E, 6hsm:G, 6hsm:F, 6hsm:H, 6y42:A, 6y42:B, 6y45:A, 6y45:C, 6y45:B, 6y45:D
2 4chu:B 127 68 0.1783 0.2205 0.4118 4.88e-09
3 4hf1:A 129 84 0.1975 0.2403 0.3690 8.70e-09 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
4 4cic:A 138 61 0.1465 0.1667 0.3770 2.71e-07 4cic:B
5 7b0c:A 144 140 0.2293 0.2500 0.2571 2.30e-05 7b0c:B, 5n07:A
6 8irk:A 379 80 0.1465 0.0607 0.2875 1.8 8irk:B, 8irk:C, 8irk:D, 8iry:A, 8iry:B, 8iry:C, 8iry:D, 8irz:A, 8irz:B, 8is0:A, 8is0:B
7 8jg2:A 393 88 0.1465 0.0585 0.2614 4.8 8jg2:B
8 8d53:G 446 37 0.0637 0.0224 0.2703 9.7

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218