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BioLiP
>protein
MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKT
HELKEVLNKV

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q5z:B 94 90 0.9889 0.9468 0.9889 1.63e-60 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
2 7mu5:A 110 63 0.2444 0.2000 0.3492 0.002 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
3 6sqw:A 114 66 0.2333 0.1842 0.3182 0.009 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
4 5ie9:C 95 96 0.3222 0.3053 0.3021 0.010 5ie9:A, 5ie9:B, 5ie9:D
5 4qgp:A 108 50 0.2000 0.1667 0.3600 0.13 4qgp:B
6 4cg4:C 376 37 0.1444 0.0346 0.3514 0.31 4cg4:D, 4cg4:E, 4cg4:F
7 7ody:C 100 90 0.2889 0.2600 0.2889 0.37 7ody:A, 7ody:B, 7ody:D
8 4po6:A 475 67 0.2222 0.0421 0.2985 0.86
9 7cdw:A 683 53 0.2333 0.0307 0.3962 0.99 7cdw:B
10 4v4n:AZ 99 56 0.2000 0.1818 0.3214 4.7 4v6u:BZ
11 2ivn:A 325 72 0.2444 0.0677 0.3056 5.9 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
12 4y9d:A 235 25 0.1333 0.0511 0.4800 5.9
13 1ky8:A 499 24 0.1222 0.0220 0.4583 7.1 1uxn:A, 1uxp:A, 1uxq:A, 1uxr:A, 1uxt:A, 1uxu:A, 1uxv:A
14 7ulz:A 521 60 0.2222 0.0384 0.3333 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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