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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKLSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFR
VLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVG
GGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQRRGALMGILNINHPDIEEFIDAKKVLNFFNLSVGFPM
DKKEILKLYEEDGELELSHPRSTIRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSD
YEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNS
QEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIA
PTGSISNIADTSSGLEPNFLLAYTRPLLYVNQVLREKLNPEIEKELIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM
QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSL

The query sequence (length=610) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1xje:A 627 627 1.0000 0.9729 0.9729 0.0 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
2 3o0n:A 607 614 0.9885 0.9934 0.9821 0.0 1xjm:B
3 5im3:A 874 564 0.2393 0.1670 0.2589 5.29e-50 5im3:B
4 6aui:A 745 564 0.2443 0.2000 0.2642 6.59e-43 6aui:B, 6aui:C, 6aui:D, 6aui:E, 6aui:F, 3hnc:A, 3hnc:B, 3hnd:A, 3hnd:B, 3hne:A, 3hne:B, 3hnf:A, 3hnf:B, 6l3r:A, 6l3r:E, 6lkm:A, 6lkm:B, 5tus:A, 5tus:B, 2wgh:B, 4x3v:A, 4x3v:B
5 6l7l:A 644 558 0.2344 0.2220 0.2563 1.44e-39 6l7l:E, 2wgh:A
6 3rsr:A 610 536 0.2361 0.2361 0.2687 1.23e-38
7 3s8c:A 666 549 0.2328 0.2132 0.2587 2.01e-37 2cvu:A, 2cvv:A, 2cvw:A, 2cvx:A, 2cvy:A, 2eud:A, 3k8t:A, 3s87:A, 3s8a:A, 3s8b:A, 3tb9:A, 3tba:A, 2zlf:A, 2zlg:A, 1zzd:A
8 2cvt:A 637 541 0.2328 0.2229 0.2625 2.40e-36
9 7agj:A 731 553 0.2279 0.1902 0.2514 2.77e-32 7agj:B
10 7b9q:A 868 441 0.1803 0.1267 0.2494 2.38e-31 7b9q:B
11 7b9q:A 868 172 0.0869 0.0611 0.3081 1.98e-11 7b9q:B
12 1peu:A 692 651 0.2557 0.2254 0.2396 9.66e-30 2bq1:E, 2bq1:F, 1peo:A, 1peq:A
13 6mve:A 680 593 0.2393 0.2147 0.2462 4.76e-28 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
14 7b9p:A 899 268 0.1230 0.0834 0.2799 1.91e-24
15 7b9p:A 899 164 0.0852 0.0578 0.3171 1.91e-11
16 7b9p:A 899 53 0.0361 0.0245 0.4151 1.33e-05
17 8vhu:A 743 436 0.1672 0.1373 0.2339 1.62e-18 5cns:A, 5cns:B, 5cns:C, 5cns:D, 5cnt:A, 5cnt:B, 5cnt:C, 5cnt:D, 5cnu:A, 5cnu:B, 5cnu:C, 5cnu:D, 5cnv:A, 5cnv:B, 5cnv:C, 5cnv:D, 4erm:A, 4erm:B, 4erm:C, 4erm:D, 4erp:A, 4erp:B, 4erp:C, 4erp:D, 1r1r:A, 1r1r:B, 1r1r:C, 2r1r:A, 2r1r:B, 2r1r:C, 3r1r:A, 3r1r:B, 3r1r:C, 4r1r:A, 4r1r:B, 4r1r:C, 5r1r:A, 5r1r:B, 5r1r:C, 6r1r:A, 6r1r:B, 6r1r:C, 7r1r:A, 7r1r:B, 7r1r:C, 3uus:A, 3uus:B, 3uus:C, 3uus:D, 8vhn:A, 8vhn:B, 8vho:A, 8vho:B, 8vhp:A, 8vhp:B, 8vhp:C, 8vhp:D, 8vhp:E, 8vhp:F, 8vhp:G, 8vhp:H, 8vhq:A, 8vhq:B, 8vhq:C, 8vhq:D, 8vhr:A, 8vhr:B, 8vhr:C, 8vhr:D, 8vhu:B, 6w4x:A, 6w4x:B, 2x0x:A, 2x0x:B, 2x0x:C, 2xak:A, 2xak:B, 2xak:C, 2xap:A, 2xap:B, 2xap:C, 2xav:A, 2xav:B, 2xav:C, 2xaw:A, 2xaw:B, 2xaw:C, 2xax:A, 2xax:B, 2xax:C, 2xay:A, 2xay:B, 2xay:C, 2xaz:A, 2xaz:B, 2xaz:C, 2xo4:A, 2xo4:B, 2xo4:C, 2xo5:A, 2xo5:B, 2xo5:C
18 7mdi:A 734 542 0.1836 0.1526 0.2066 1.28e-13 7mdi:B, 7mdi:D, 7mdi:C
19 7urg:A 401 105 0.0541 0.0823 0.3143 1.03e-06 7urg:B
20 6vz8:D 531 65 0.0295 0.0339 0.2769 1.3 6vz8:H, 6vz8:L, 6vz8:P
21 4f32:B 423 82 0.0426 0.0615 0.3171 2.1 4f32:A
22 5k2o:A 585 58 0.0279 0.0291 0.2931 4.3 3e9y:A, 3ea4:A, 8et4:A, 8et5:A, 5k3s:A, 5k6q:A, 5k6r:A, 5k6t:A, 7stq:A, 7tzz:A, 7u1d:A, 7u1u:A, 7u25:A, 6u9h:A, 6u9h:B, 6u9h:H, 6u9h:I, 6u9h:L, 6u9h:M, 6u9h:P, 6u9h:Q, 6vz8:E, 6vz8:I, 6vz8:M, 6vz8:Q, 5wj1:A, 1ybh:A, 1yhy:A, 1yhz:A, 1yi0:A, 1yi1:A, 1z8n:A
23 2m7b:A 77 28 0.0197 0.1558 0.4286 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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