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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLSDIYLELKKGYADSLLYSDLSLLVNIMEYEKDIDVMSIQSLVAGYEKSDTPTITCGIIVYNESKRIKKCLNSVKDDF
NEIIVLDSYSTDDTVDIIKCDFPDVEIKYEKWKNDFSYARNKIIEYATSEWIYFIDADNLYSKENKGKIAKVARVLEFFS
IDCVVSPYIEEYTGHLYSDTRRMFRLNGKVKFHGKVHEEPMNYNHSLPFNFIVNLKVYHNENNIKSKTRRNINLTEEMLR
LEPENPKWLFFFGRELHLLDKDEEAIDYLKKSINNYKKFNDQRHFIDALVLLCTLLLQRNNYVDLTLYLDILETEYPRCV
DVDYFRSAILLVDMQNKLTSLSNMIDEALTDERYSAINTTKDHFKRILISLNIQLENWERVKEISGEIKNDNMKKEIKQY
LANSLHNIEHVLKGIE

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7msn:A 417 417 1.0000 0.9976 0.9976 0.0 7msn:B, 7msp:A, 7msp:B
2 7msk:A 421 400 0.3990 0.3943 0.4150 3.59e-105 7msk:B
3 6yv8:A 346 131 0.0769 0.0925 0.2443 0.002 6yv8:B, 6yv9:A, 6yv9:B
4 5tze:C 349 93 0.0673 0.0802 0.3011 0.005 5tze:E, 5tzj:C, 5tzj:A, 5tzk:C
5 1h7q:A 240 157 0.0841 0.1458 0.2229 0.089 1h7l:A, 1qgq:A, 1qgs:A
6 6h4f:B 318 93 0.0553 0.0723 0.2473 0.52 6h1j:B, 6h21:A, 6h21:B, 6h21:C, 6h2n:A, 6h2n:B, 6h2n:C, 6h4f:C, 6h4f:F, 6h4f:O, 6h4f:P, 6h4f:E, 6h4f:G, 6h4f:Q, 6h4f:A, 6h4f:D, 6h4f:H, 6h4f:I, 6h4m:B, 6h4m:C, 6h4m:F, 6h4m:O, 6h4m:P, 6h4m:E, 6h4m:G, 6h4m:Q, 6h4m:A, 6h4m:D, 6h4m:H, 6h4m:I, 6hnq:B, 6hnq:C, 6hnq:F, 6hnq:O, 6hnq:P, 6hnq:E, 6hnq:G, 6hnq:Q, 6hnq:A, 6hnq:D, 6hnq:H, 6hnq:I
7 8ui7:A 643 105 0.0529 0.0342 0.2095 0.52 8ui8:A, 8ui9:A, 8uii:A
8 2z86:C 603 94 0.0673 0.0464 0.2979 1.2 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
9 5x6b:J 377 77 0.0505 0.0557 0.2727 1.4 5x6b:I
10 4dec:A 284 98 0.0649 0.0951 0.2755 2.9 4de7:A, 3e25:A, 5jsx:A, 5jt0:A, 5juc:A, 5jud:A, 4y6n:A, 4y6u:A, 4y7f:A, 4y7g:A, 4y9x:A
11 3j5s:D 554 70 0.0553 0.0415 0.3286 3.2
12 3top:A 890 112 0.0649 0.0303 0.2411 5.5 3top:B
13 6t46:G 365 50 0.0312 0.0356 0.2600 8.7 6t46:A, 6t46:C, 6t46:E
14 2og1:A 285 48 0.0409 0.0596 0.3542 9.9 2puh:A, 2puj:A, 2rht:A, 2rhw:A, 3v1m:A, 3v1n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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