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BioLiP
>protein
MKLSARNQLAGKVVSIKEGAVNGIVVLDIGGGNQISSTISMDSIRELGLQVGSDAYAVIKATSVMIGIDDWS

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9bed:A 74 72 1.0000 0.9730 1.0000 3.10e-45 9beb:A, 9beb:E, 9beb:C, 9beb:F, 9beb:B, 9beb:D, 9bed:D, 9bed:C, 9bed:F, 9bed:B, 9bed:E, 9bel:A, 9bel:C, 9bel:B, 9bel:E, 9bel:D, 9bel:F, 9bem:A, 9bem:C, 9bem:B, 9bem:E, 9bem:F, 9bem:D, 9beo:A, 9beo:E, 9beo:C, 9beo:B, 9beo:D, 9beo:F, 9d2c:A, 9d2c:D, 9d2c:B, 9d2c:C, 9d2c:E, 9d2c:F, 9d2c:H, 9d2c:K, 9d2c:J, 9d2c:I, 9d2c:L, 9d2c:M
2 1gug:A 67 64 0.5139 0.5522 0.5781 6.93e-20 1gug:B, 1gug:C, 1gug:D, 1gug:E, 1gug:F, 1gun:A, 1gun:B, 1gun:C, 1gun:D, 1gun:E, 1gun:F, 1guo:A, 1guo:B, 1guo:C, 1guo:D, 1guo:E, 1guo:F
3 1h9m:A 141 68 0.4444 0.2270 0.4706 6.56e-15 1h9m:B
4 1h9m:A 141 70 0.4028 0.2057 0.4143 2.12e-12 1h9m:B
5 1fr3:A 67 64 0.3194 0.3433 0.3594 3.81e-06 1fr3:D, 1fr3:B, 1fr3:E, 1fr3:F, 1fr3:C, 1fr3:G, 1fr3:J, 1fr3:I, 1fr3:H, 1fr3:K, 1fr3:L
6 8p5d:LD0 281 53 0.2222 0.0569 0.3019 1.8 8p60:LD0, 8p60:KD0, 7qca:LD0
7 6pwf:K 454 66 0.2361 0.0374 0.2576 2.5
8 6c75:A 378 24 0.1389 0.0265 0.4167 3.7 6c75:B, 6c76:A, 6c7l:A
9 6ky4:A 89 18 0.1528 0.1236 0.6111 4.1
10 1o7l:B 256 71 0.3056 0.0859 0.3099 4.4 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D
11 3fi0:G 302 59 0.2500 0.0596 0.3051 5.9 3fhj:A, 3fhj:B, 3fhj:E, 3fhj:F, 3fi0:A, 3fi0:B, 3fi0:C, 3fi0:D, 3fi0:E, 3fi0:F, 3fi0:H, 3fi0:I, 3fi0:J, 3fi0:K, 3fi0:L, 3fi0:M, 3fi0:N, 3fi0:O, 3fi0:P, 3fi0:Q, 3fi0:R
12 7b3n:B 170 32 0.1528 0.0647 0.3438 7.3 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
13 7kn8:B 708 29 0.1667 0.0169 0.4138 8.0 7kn8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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