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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKLLVVSWGDFERWKETKYRFGGETSVGPSTLPILQKVIKPDWTVIVLSDTIGKDFSSVETLREDVRNRVMDFLDRIGAG
REVDVIIAPGIGEFTHGSFRGSAMDAYYYVLHALSEIIPTKGDLEVHFDSTHGLNYVTLLTYRALKDLLGIAAVMNTVTF
YAYNSDPFVPKITKELNINTIETTMVKPTPLSEPLPGFDEYLCPYSMERAEFVRLKGSLNTLKNLRKEKKKLEAWIGSLL
FGLPLLFLEEFPDIGRLESYIEELAETWGGAIAVNAEEKAVTRRLAFGSGFGTLVKLLFQARITRGLLVEEPYSIEKLYS
VSDRLFRGSTLQRVRVELGKIEDKAIKYARKGAFPRDIPLRDFLGFDAANREVSPRNVLAHAGLEANVVEVSMEAWEPKR
PEEEAGRHTHLKYTPVGLKKVEDIVSRALKESH

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6o6v:A 433 433 1.0000 1.0000 1.0000 0.0 6o6v:B, 6o6x:A, 6o6x:B, 6o6y:A, 6o6y:B, 6o6z:A, 6o6z:B, 6o70:A, 6o70:B, 6o71:A, 6o71:B, 6ov0:A, 6ov0:B, 6ov0:C, 6ov0:D
2 4eog:A 466 345 0.2102 0.1953 0.2638 3.51e-33
3 2i71:B 376 195 0.1062 0.1223 0.2359 2.51e-07 2i71:A
4 6mez:B 359 68 0.0416 0.0501 0.2647 1.6 4bcl:A, 3eoj:A, 6mez:A, 3vdi:A
5 6zrz:AAA 357 57 0.0416 0.0504 0.3158 1.7 6zrz:BBB
6 6r7b:A 454 100 0.0577 0.0551 0.2500 2.2 6r7b:B, 6r7b:C, 6r9r:B, 6r9r:A, 6r9r:C
7 5ipf:A 201 82 0.0531 0.1144 0.2805 2.7 5ipf:B, 5ipf:C, 5ipf:D
8 3beo:A 375 137 0.0831 0.0960 0.2628 9.3 8ahe:A, 8ahe:B, 8ahf:A, 8ahf:B, 3beo:B
9 5k5t:A 578 78 0.0531 0.0398 0.2949 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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