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BioLiP
>protein
MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHLHEKVRLEIGVSEPFVKPTVEAILKAARTGEVGDGKIFVLPVEK
VYRIRTGEED

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1v3s:A 97 95 1.0000 0.9278 0.9474 6.65e-57 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
2 1ul3:B 94 90 0.5222 0.5000 0.5222 1.70e-25 1ul3:C
3 3lf0:A 99 91 0.4778 0.4343 0.4725 8.20e-24
4 3ta0:C 99 94 0.5111 0.4646 0.4894 1.11e-23 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
5 4c3k:D 101 94 0.5222 0.4653 0.5000 6.25e-23 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
6 4cnz:A 100 96 0.5111 0.4600 0.4792 7.91e-23 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
7 8wm7:G 94 94 0.5222 0.5000 0.5000 8.28e-23
8 5l9n:A 92 91 0.4778 0.4674 0.4725 4.46e-22
9 2eg2:A 95 89 0.5000 0.4737 0.5056 1.56e-21
10 3lf0:B 112 105 0.4778 0.3839 0.4095 2.47e-21 3lf0:C
11 2o66:B 108 85 0.4667 0.3889 0.4941 3.60e-21 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
12 3ta1:D 115 108 0.5111 0.4000 0.4259 4.98e-21 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
13 6yc7:F 94 88 0.4222 0.4043 0.4318 5.32e-21
14 4cnz:E 112 108 0.5111 0.4107 0.4259 6.67e-21 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
15 3n5b:A 112 108 0.5222 0.4196 0.4352 2.14e-20 8wm7:E
16 2j9d:B 103 94 0.5222 0.4563 0.5000 3.08e-20 2j9d:H, 2j9d:K
17 2xbp:A 113 108 0.5222 0.4159 0.4352 8.39e-20 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
18 2gnk:A 95 91 0.4111 0.3895 0.4066 3.70e-19
19 7p4v:A 113 106 0.4667 0.3717 0.3962 1.57e-18
20 2rd5:D 126 102 0.4667 0.3333 0.4118 3.17e-18 2rd5:C
21 6yc7:A 105 99 0.4222 0.3619 0.3838 8.99e-18 6yc7:B, 6yc7:E, 6yc7:C
22 2j9e:B 119 107 0.5222 0.3950 0.4393 1.18e-17 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
23 4ozl:A 104 91 0.4556 0.3942 0.4505 1.05e-16 4ozn:B
24 2ns1:B 113 108 0.4111 0.3274 0.3426 1.31e-16 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
25 7p50:A 121 106 0.4333 0.3223 0.3679 5.99e-15 7p50:B, 7p50:C
26 3ncr:C 116 106 0.4889 0.3793 0.4151 6.77e-15 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
27 4ozn:A 116 103 0.4556 0.3534 0.3981 1.07e-14 4ozj:A, 4ozn:C
28 4usj:C 142 104 0.4556 0.2887 0.3942 2.53e-12 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 7o4x:A 103 94 0.4000 0.3495 0.3830 1.22e-10
30 4rx6:B 115 101 0.3444 0.2696 0.3069 5.36e-08 4r25:A, 4rx6:A, 4rx6:D
31 4wk1:A 92 85 0.2556 0.2500 0.2706 3.61e-04
32 4d3h:B 104 96 0.2556 0.2212 0.2396 0.074 4d3h:A, 4d3h:C
33 4rle:A 116 109 0.3000 0.2328 0.2477 0.23
34 1sb3:C 161 33 0.1333 0.0745 0.3636 0.71 1rm6:C, 1rm6:F, 1sb3:F
35 8tyx:B 162 63 0.1889 0.1049 0.2698 1.4 8tyy:B
36 3oib:A 381 86 0.2889 0.0682 0.3023 1.7 3oib:B, 3p4t:A, 3p4t:B
37 4rww:A 113 109 0.2778 0.2212 0.2294 1.9 4rww:B, 4rww:C
38 8c6j:V 934 42 0.1667 0.0161 0.3571 2.2 6hys:A, 6hys:B, 6hys:C, 6hys:D, 6hyt:A, 6hyt:B, 6hyt:C, 6hyt:D, 6hyu:A
39 6hyu:C 585 40 0.1778 0.0274 0.4000 2.8
40 7kua:A 149 24 0.1222 0.0738 0.4583 2.9
41 2qpx:A 376 59 0.2111 0.0505 0.3220 3.7
42 3w15:A 336 27 0.1111 0.0298 0.3704 4.7
43 4xz6:A 291 41 0.1444 0.0447 0.3171 8.7 4xz6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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