Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETELHEKVRLEIGVSEPFVKPTVEAILKAARTGEVGDGKIFV
LPVEKVYRIRTGEEDEA

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1v3s:A 97 97 1.0000 1.0000 1.0000 2.63e-64 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
2 3ta0:C 99 97 0.5052 0.4949 0.5052 7.49e-26 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
3 4c3k:D 101 95 0.5052 0.4851 0.5158 1.10e-24 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
4 8wm7:G 94 95 0.5052 0.5213 0.5158 1.75e-24
5 3lf0:A 99 93 0.4536 0.4444 0.4731 1.86e-24
6 3lf0:B 112 105 0.4845 0.4196 0.4476 2.54e-24 3lf0:C
7 4cnz:E 112 108 0.5155 0.4464 0.4630 3.20e-24 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
8 4cnz:A 100 96 0.4845 0.4700 0.4896 1.06e-23 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
9 2j9d:B 103 94 0.4948 0.4660 0.5106 2.25e-23 2j9d:H, 2j9d:K
10 3n5b:A 112 108 0.5258 0.4554 0.4722 3.20e-23 8wm7:E
11 3ta1:D 115 110 0.5052 0.4261 0.4455 4.45e-23 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
12 1ul3:B 94 95 0.4845 0.5000 0.4947 7.20e-23 1ul3:C
13 2xbp:A 113 108 0.5258 0.4513 0.4722 1.40e-22 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
14 5l9n:A 92 96 0.4433 0.4674 0.4479 3.83e-22
15 2rd5:D 126 105 0.4948 0.3810 0.4571 3.92e-22 2rd5:C
16 2o66:B 108 91 0.4433 0.3981 0.4725 2.83e-21 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
17 2eg2:A 95 96 0.4742 0.4842 0.4792 3.03e-21
18 2gnk:A 95 97 0.4124 0.4211 0.4124 7.92e-21
19 2ns1:B 113 110 0.4433 0.3805 0.3909 1.39e-20 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
20 7p4v:A 113 106 0.4433 0.3805 0.4057 9.24e-20
21 6yc7:F 94 97 0.4124 0.4255 0.4124 2.89e-19
22 2j9e:B 119 107 0.4948 0.4034 0.4486 3.97e-19 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
23 6yc7:A 105 106 0.4330 0.4000 0.3962 6.63e-19 6yc7:B, 6yc7:E, 6yc7:C
24 4ozl:A 104 93 0.4330 0.4038 0.4516 3.03e-18 4ozn:B
25 4ozn:A 116 103 0.4330 0.3621 0.4078 1.09e-16 4ozj:A, 4ozn:C
26 3ncr:C 116 106 0.4845 0.4052 0.4434 1.96e-16 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
27 7p50:A 121 106 0.4124 0.3306 0.3774 2.99e-16 7p50:B, 7p50:C
28 4usj:C 142 104 0.4433 0.3028 0.4135 3.05e-14 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 7o4x:A 103 97 0.3918 0.3689 0.3918 6.45e-12
30 4rx6:B 115 101 0.3402 0.2870 0.3267 2.66e-09 4r25:A, 4rx6:A, 4rx6:D
31 4wk1:A 92 92 0.2577 0.2717 0.2717 0.012
32 4rle:A 116 109 0.2887 0.2414 0.2569 0.15
33 3ku4:B 293 57 0.1856 0.0614 0.3158 0.39 3ku4:A, 3ku4:C, 3ku4:D, 3kuk:A, 3kuk:B, 3kvr:A, 3kvr:B, 3kvy:A, 3kvy:B
34 4d3h:B 104 104 0.2784 0.2596 0.2596 0.71 4d3h:A, 4d3h:C
35 8pqi:A 299 46 0.1546 0.0502 0.3261 1.7 6joi:A
36 6joj:A 338 46 0.1546 0.0444 0.3261 1.8 5grn:A, 6jok:A, 6jol:A, 8pqh:A
37 4rww:A 113 109 0.2680 0.2301 0.2385 2.1 4rww:B, 4rww:C
38 8c6j:V 934 42 0.1546 0.0161 0.3571 2.6 6hys:A, 6hys:B, 6hys:C, 6hys:D, 6hyt:A, 6hyt:B, 6hyt:C, 6hyt:D, 6hyu:A
39 6hyu:C 585 40 0.1649 0.0274 0.4000 3.4
40 7ev9:A 382 63 0.1959 0.0497 0.3016 3.9 7ev9:E, 7ev9:I, 8oyi:A, 8oyi:E, 8oyi:I, 3rgb:A, 3rgb:E, 3rgb:I, 7s4h:A, 7s4h:E, 7s4h:I, 7s4i:A, 7s4i:E, 7s4i:I, 7s4j:A, 7s4j:E, 7s4j:I, 7s4k:A, 7s4k:E, 7s4k:I, 8sqw:A, 8sqw:E, 8sqw:I, 8sr1:A, 8sr1:E, 8sr1:I, 8sr2:A, 8sr2:E, 8sr2:I, 8sr4:A, 8sr4:E, 8sr4:I, 8sr5:A, 8sr5:E, 8sr5:I, 7t4o:A, 7t4o:E, 7t4o:I, 7t4p:A, 7t4p:E, 7t4p:I, 1yew:A, 1yew:E, 1yew:I
41 7kua:A 149 24 0.1134 0.0738 0.4583 4.1
42 3w15:A 336 27 0.1031 0.0298 0.3704 5.6
43 8tyx:B 162 56 0.1546 0.0926 0.2679 8.1 8tyy:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218