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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD
HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK
TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ne7:A 281 274 1.0000 0.9751 1.0000 0.0 1ne7:B, 1ne7:C, 1ne7:E, 1ne7:F, 1ne7:D
2 5hj5:B 267 258 0.5876 0.6030 0.6240 2.39e-119 5hj5:A, 5hj5:C, 5hj5:D
3 1dea:A 266 258 0.5620 0.5789 0.5969 4.23e-116 1dea:B, 1fqo:A, 1fqo:B, 1hor:A, 1hor:B, 1hot:A, 2wu1:A, 2wu1:B
4 3hn6:A 271 258 0.5803 0.5867 0.6163 2.29e-113 3hn6:B, 3hn6:F, 3hn6:D, 3hn6:E
5 2bkv:B 242 243 0.3504 0.3967 0.3951 2.49e-57 2bkv:A, 2bkx:A, 2bkx:B
6 2ri1:A 235 243 0.3029 0.3532 0.3416 2.15e-37 2ri1:B
7 3e7f:B 263 211 0.2007 0.2091 0.2607 1.09e-04 3e7f:A, 3eb9:A, 3eb9:B, 2j0e:A, 2j0e:B
8 3uva:C 405 75 0.0657 0.0444 0.2400 3.4 3uu0:A, 3uu0:B, 3uu0:C, 3uu0:D, 3uva:A, 3uva:B, 3uva:D, 3uxi:A
9 6ovt:A 562 113 0.1277 0.0623 0.3097 3.5 6ovt:B, 6ovt:C, 6ovt:D
10 4w7s:B 448 34 0.0511 0.0312 0.4118 3.5
11 4g5d:A 283 102 0.0949 0.0919 0.2549 3.9 4g5d:B
12 2cjk:A 167 37 0.0584 0.0958 0.4324 4.0 2km8:C
13 8ooo:A 447 74 0.0730 0.0447 0.2703 4.4 8ooo:L, 8ooo:B, 8ooo:H, 8ooo:C, 8ooo:J, 8ooo:D, 8ooo:F, 8ooo:E, 8ooo:G, 8ooo:I, 8ooo:K, 8ooq:A, 8ooq:L, 8ooq:B, 8ooq:H, 8ooq:C, 8ooq:J, 8ooq:D, 8ooq:F, 8ooq:E, 8ooq:G, 8ooq:I, 8ooq:K, 8ooq:P, 8ooq:c, 8ooq:Q, 8ooq:Y, 8ooq:S, 8ooq:a, 8ooq:T, 8ooq:V, 8ooq:U, 8ooq:X, 8ooq:Z, 8ooq:b
14 2h59:A 246 70 0.0693 0.0772 0.2714 7.3 4buz:A, 4bv2:A, 4bv2:B, 3d4b:A, 3d81:A, 2h2d:A, 2h2f:A, 2h2g:A, 2h2h:A, 2h2i:A, 2h4f:A, 2h4h:A, 2h4j:A, 2h59:B, 3jr3:A, 3pdh:A, 1yc5:A
15 5ab6:D 396 30 0.0511 0.0354 0.4667 7.4 5ab6:A, 5ab6:B, 5ab6:C, 5ab6:E, 5ab6:F, 5ab7:A, 5ab7:B, 5ab7:C, 5ab7:D, 5ab7:E, 5ab7:F
16 5hw8:B 122 84 0.0766 0.1721 0.2500 7.6 5hw8:A, 5hw8:C, 5hw8:D, 5hw8:E, 5hw8:F, 5hw8:G, 5hw8:H, 6tz6:C, 6tz6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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