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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKLENQLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK
RSEEDERSVLISLTEDGALLKEKAVDIPGTILGLSKQSGEDLKQLKSALYTLLETLH

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1z9c:C 138 137 1.0000 0.9928 1.0000 9.23e-95 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
2 5hli:A 146 112 0.3504 0.3288 0.4286 9.56e-26 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
3 3hsr:B 133 125 0.3358 0.3459 0.3680 7.42e-23 3hsr:A, 3hsr:C, 3hsr:D
4 7el3:A 138 121 0.2628 0.2609 0.2975 5.21e-11 7el3:B
5 5aip:A 141 83 0.2117 0.2057 0.3494 1.10e-10 5aip:B
6 5h3r:A 141 84 0.1971 0.1915 0.3214 1.02e-06 5h3r:B
7 5yhx:N 146 109 0.2701 0.2534 0.3394 1.02e-05 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
8 6fi9:A 144 59 0.1606 0.1528 0.3729 1.59e-05 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
9 5x80:A 137 101 0.1679 0.1679 0.2277 2.47e-05 5hso:A, 5hso:C, 5hso:D, 5hso:B, 5x7z:A, 5x80:B
10 4em0:B 150 80 0.1898 0.1733 0.3250 5.46e-05
11 6jbx:A 146 95 0.2190 0.2055 0.3158 9.77e-05 6jbx:B
12 7kua:A 149 123 0.2117 0.1946 0.2358 2.04e-04
13 4rgu:B 144 94 0.1679 0.1597 0.2447 4.77e-04 5bmz:A, 5bmz:B, 5bmz:C, 5bmz:D, 4rgs:A, 4rgs:B, 4rgu:A
14 6pcp:A 140 103 0.1606 0.1571 0.2136 0.001 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F
15 2fbh:A 137 86 0.1898 0.1898 0.3023 0.001
16 5cyv:B 143 103 0.1825 0.1748 0.2427 0.001 5cyv:A, 3fm5:C
17 3ech:B 135 70 0.1460 0.1481 0.2857 0.002 3ech:A
18 6c2s:A 142 89 0.1825 0.1761 0.2809 0.014 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
19 7kfq:A 141 95 0.1460 0.1418 0.2105 0.014 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
20 7dvr:A 147 73 0.1606 0.1497 0.3014 0.046 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
21 6eck:B 532 82 0.1460 0.0376 0.2439 0.097 6ech:A, 6ech:B, 6ech:C, 6ech:D, 6eck:A, 4ima:A, 4ip7:A, 4ip7:B, 4ip7:D, 8tbs:B, 8tbs:C, 8tbs:E, 8tbs:F, 8tbs:G, 8tbs:H, 8tbt:A, 8tbt:B, 8tbt:C, 8tbt:D, 8tbu:A, 8tbu:D, 8tbu:F, 8tbu:H, 2vgb:A, 2vgb:C, 2vgb:D, 2vgf:A, 2vgf:C, 2vgf:D, 2vgg:A, 2vgg:C, 2vgg:D, 2vgi:A, 2vgi:C, 2vgi:D, 8xfd:A, 8xfd:B, 8xfd:C, 8xfd:D
22 4aij:B 142 53 0.1168 0.1127 0.3019 0.15 4aij:A, 4aik:A
23 6gg3:F 524 77 0.1387 0.0363 0.2468 0.21 1a49:A, 1a49:B, 1a49:C, 1a49:D, 1a49:E, 1a49:F, 1a49:G, 1a49:H, 1a5u:A, 1a5u:B, 1a5u:C, 1a5u:D, 1a5u:E, 1a5u:F, 1a5u:G, 1a5u:H, 1aqf:A, 1aqf:B, 1aqf:C, 1aqf:D, 1aqf:F, 1aqf:G, 1aqf:H, 4b2d:A, 4b2d:B, 4b2d:C, 4b2d:D, 6b6u:A, 6b6u:B, 3bjf:A, 3bjf:B, 3bjf:C, 3bjf:D, 3bjt:A, 3bjt:B, 3bjt:C, 3bjt:D, 1f3w:A, 1f3w:B, 1f3w:C, 1f3w:D, 1f3w:E, 1f3w:F, 1f3w:G, 1f3w:H, 1f3x:A, 1f3x:B, 1f3x:C, 1f3x:D, 1f3x:E, 1f3x:F, 1f3x:G, 1f3x:H, 8f5t:A, 8f5t:B, 8f5t:C, 8f5t:D, 8f5t:E, 8f5t:F, 8f5t:G, 8f5t:H, 8f5u:A, 8f5u:B, 8f5u:C, 8f5u:D, 8f6m:A, 8f6m:B, 8f6m:C, 8f6m:D, 8f6m:E, 8f6m:F, 8f6m:G, 8f6m:H, 4fxf:A, 4fxf:D, 4fxf:C, 4fxf:B, 4fxj:A, 4fxj:C, 4fxj:D, 4g1n:A, 4g1n:B, 4g1n:C, 4g1n:D, 8g2e:A, 2g50:A, 2g50:B, 2g50:C, 2g50:D, 2g50:E, 2g50:F, 2g50:G, 2g50:H, 6gg3:A, 6gg3:C, 6gg3:D, 6gg3:G, 6gg3:H, 6gg3:K, 6gg3:L, 6gg4:A, 6gg4:B, 6gg5:A, 6gg5:B, 6gg6:A, 6gg6:B, 6gg6:C, 6gg6:D, 6gg6:E, 6gg6:F, 6gg6:G, 6gg6:H, 3gqy:A, 3gqy:B, 3gqy:C, 3gqy:D, 3gr4:A, 3gr4:B, 3gr4:C, 3gr4:D, 3h6o:B, 3h6o:D, 8hmq:B, 8hmr:A, 8hmr:B, 8hmr:C, 8hmr:D, 8hms:A, 8hms:B, 8hms:C, 8hmu:A, 8hmu:C, 8hmu:D, 6jfb:A, 6jfb:B, 6jfb:C, 6jfb:D, 4jpg:A, 4jpg:B, 4jpg:C, 4jpg:D, 7l21:A, 7l21:B, 7l21:C, 7l21:D, 3me3:A, 3me3:C, 3me3:D, 3n25:A, 3n25:B, 3n25:C, 3n25:D, 3n25:E, 3n25:F, 3n25:G, 3n25:H, 6nu1:C, 6nu1:D, 6nu5:A, 6nu5:B, 6nub:A, 6nub:B, 1pkn:A, 4qg6:B, 4qg6:D, 4qg8:B, 4qg8:C, 4qg9:A, 4qg9:B, 7r6y:A, 7r6y:B, 3srd:A, 3srd:B, 3srd:C, 3srd:D, 3srf:C, 3srf:A, 3srf:B, 3srf:D, 3srf:E, 3srf:F, 3srf:G, 3srf:H, 1t5a:A, 1t5a:B, 1t5a:C, 1t5a:D, 6ttf:A, 6ttf:B, 6ttf:C, 6ttf:D, 6ttq:A, 6ttq:B, 6ttq:C, 6ttq:D, 3u2z:A, 3u2z:B, 3u2z:C, 3u2z:D, 6v74:A, 6v74:B, 6v75:C, 6v75:A, 6v75:B, 6v76:C, 6v76:A, 6v76:B, 4wj8:A, 4wj8:B, 4wj8:C, 4wj8:D, 6wp3:A, 6wp4:A, 6wp4:B, 6wp4:C, 6wp4:D, 6wp5:B, 6wp5:A, 6wp5:C, 6wp6:C, 6wp6:A, 5x0i:A, 5x0i:B, 5x0i:C, 5x0i:D, 5x1v:A, 5x1v:B, 5x1v:C, 5x1v:D, 5x1w:A, 5x1w:B, 5x1w:C, 5x1w:D, 4yj5:A, 4yj5:B, 4yj5:C, 4yj5:D
24 4ima:C 505 77 0.1460 0.0396 0.2597 0.21 4ima:B, 4ip7:C, 8tbs:A, 8tbs:D, 2vgb:B, 2vgf:B, 2vgg:B
25 6v74:C 499 37 0.1095 0.0301 0.4054 0.27 3h6o:A, 8hmq:A, 8hmq:C, 8hmq:D, 8hms:D, 3me3:B
26 6gg3:E 481 107 0.1752 0.0499 0.2243 0.41 3h6o:C, 8hmu:B, 6nu1:A
27 3gfi:A 143 92 0.1825 0.1748 0.2717 0.52 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
28 3hqp:A 498 77 0.1387 0.0382 0.2468 0.62 3hqo:K, 3hqo:A, 3hqo:B, 3hqo:C, 3hqp:B, 3hqp:C, 3hqp:D, 3hqp:E, 3hqp:F, 3hqp:G, 3hqp:H, 3hqp:I, 3hqp:J, 3hqp:K, 3hqp:L, 3hqp:M, 3hqp:N, 3hqp:O, 3hqp:P, 3hqq:A, 3hqq:B, 3hqq:C, 3hqq:D, 3hqq:E, 3hqq:F, 3hqq:G, 3hqq:H, 3hqq:I, 3hqq:J, 3hqq:K, 3hqq:L, 3hqq:M, 3hqq:N, 3hqq:O, 3hqq:P, 3hqq:Q, 3hqq:R, 3hqq:S, 3hqq:T, 3hqq:U, 3hqq:V, 3hqq:W, 3hqq:X, 3pp7:B, 3qv6:A, 3qv7:D, 3qv7:A, 3qv8:D, 3srk:A
29 4hyv:A 498 100 0.1679 0.0462 0.2300 0.84 4hyv:B, 4hyw:B, 4hyw:A, 4kct:B, 4kct:A, 4kcu:A, 4kcu:B, 4kcv:B, 4kcv:A, 4kcw:A, 4kcw:B
30 4gf0:A 208 67 0.1606 0.1058 0.3284 0.91 4gf0:B
31 2evx:A 382 101 0.2044 0.0733 0.2772 1.4
32 2frh:A 127 72 0.1387 0.1496 0.2639 1.5 2frh:B
33 4u49:B 318 28 0.1095 0.0472 0.5357 1.5
34 3f8f:A 114 42 0.1022 0.1228 0.3333 2.4 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
35 3q5f:A 141 46 0.0949 0.0922 0.2826 2.6 3q5f:B
36 5zi8:A 104 60 0.1387 0.1827 0.3167 3.2 7wh4:A, 7wh4:B, 5zhv:A, 5zhv:B, 5zi8:B
37 7prw:A 326 57 0.1168 0.0491 0.2807 3.5 3bqd:A, 6bqu:B, 6bqu:A, 6bse:A, 6bse:B, 6bsf:B, 6bsf:A, 5cbx:A, 5cbx:B, 5cbx:E, 5cbx:F, 5cby:A, 5cby:B, 5cbz:A, 5cbz:B, 5cbz:E, 5cc1:A, 5cc1:B, 5cc1:W, 5cc1:X, 6cfn:B, 6cfn:D, 6cfn:G, 6cfn:H, 3cld:A, 3cld:B, 4csj:A, 6dxk:A, 6dxk:B, 5e69:A, 5e69:B, 5e6a:A, 5e6a:B, 5e6b:A, 5e6b:B, 5e6c:B, 5e6d:A, 5e6d:B, 3e7c:A, 3e7c:B, 6el6:A, 6el7:A, 6el9:A, 5emc:A, 5emc:B, 5emp:A, 5emp:B, 5emq:A, 5emq:B, 8ffv:C, 8ffw:C, 3fyl:A, 5g3j:A, 5g5w:A, 3g6p:A, 3g6q:B, 3g6r:B, 3g6t:B, 3g8u:B, 3g97:B, 3g97:A, 3g99:B, 3g9j:A, 3g9o:B, 3g9o:A, 3g9p:B, 3g9p:A, 1gdc:A, 2gda:A, 3h52:A, 3h52:B, 3h52:C, 3h52:D, 4hn5:A, 4hn5:B, 4hn6:A, 4hn6:B, 3k22:A, 3k22:B, 3k23:A, 3k23:B, 3k23:C, 7krj:D, 4lsj:A, 1m2z:A, 1m2z:D, 4mdd:A, 4mdd:B, 3mne:A, 3mno:A, 3mnp:A, 5nfp:A, 5nft:A, 1nhz:A, 4p6w:A, 4p6x:A, 4p6x:C, 4p6x:I, 4p6x:E, 4p6x:G, 4p6x:K, 1p93:A, 1p93:B, 1p93:C, 1p93:D, 7prv:A, 7prv:B, 7prw:B, 7prx:A, 1r4r:A, 1rgd:A, 4tnt:A, 4tnt:B, 5uc1:A, 5uc1:B, 5uc3:A, 5uc3:B, 4udc:A, 4udd:A, 5va0:A, 5va0:B, 5va7:A, 5va7:B, 8vkz:A, 8vkz:B, 6x6d:A, 6x6d:B, 6x6e:A, 6x6e:B
38 6su2:A 498 100 0.1752 0.0482 0.2400 4.8 6su2:B, 6su2:C, 6su2:D
39 5u03:A 559 65 0.1241 0.0304 0.2615 6.0 7mgz:F, 7mgz:P, 7mgz:O, 7mgz:Q, 7mh0:A, 7mh0:B, 7mh0:C, 7mh0:D, 7mif:C, 7mif:G, 7mif:H, 7mif:I, 7mig:C, 7mig:A, 7mig:B, 7mig:E, 7mip:C, 7mip:D, 7mip:G, 7mip:I, 5u03:B, 5u03:C, 5u03:D
40 6sga:FE 434 38 0.0803 0.0253 0.2895 7.5 6sgb:FE
41 5e1z:B 169 59 0.0876 0.0710 0.2034 8.2 5e1x:A, 5e20:A
42 6o5c:A 215 36 0.0657 0.0419 0.2500 8.7 6o5c:B
43 1lvw:A 295 32 0.1022 0.0475 0.4375 9.5 1lvw:B, 1lvw:C, 1lvw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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