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BioLiP
>protein
MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2kkd:A 52 52 1.0000 1.0000 1.0000 1.84e-33 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
2 6gps:A 330 50 0.6731 0.1061 0.7000 3.71e-25 6gpx:A
3 5xpd:A 269 50 0.6731 0.1301 0.7000 4.29e-25
4 2pve:A 52 52 0.7115 0.7115 0.7115 1.86e-24 2pve:B, 2pve:C
5 4xnw:C 350 50 0.6731 0.1000 0.7000 1.91e-24 4xnv:A, 4xnw:A
6 6bd4:A 379 50 0.6731 0.0923 0.7000 1.97e-24
7 2dsx:A 52 50 0.7308 0.7308 0.7600 5.76e-24 1rdg:A
8 6li2:A 347 50 0.6731 0.1009 0.7000 1.06e-23
9 5vbl:B 353 50 0.6731 0.0992 0.7000 1.32e-23 6knm:B, 7sus:A
10 6ln2:A 437 50 0.6731 0.0801 0.7000 1.43e-23 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
11 6me8:A 449 50 0.6731 0.0780 0.7000 1.66e-23 6me6:A, 6me7:A, 6me9:A
12 6iiv:A 461 50 0.6731 0.0759 0.7000 1.74e-23 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
13 1yk5:A 53 50 0.6923 0.6792 0.7200 3.46e-23 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
14 5ai2:A 54 50 0.6731 0.6481 0.7000 1.04e-22 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
15 7f1t:A 423 50 0.6731 0.0827 0.7000 6.43e-22 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
16 2pvx:B 54 50 0.6538 0.6296 0.6800 1.99e-21 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
17 7e0l:A 491 48 0.5577 0.0591 0.6042 6.40e-16 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
18 2v3b:B 53 50 0.5192 0.5094 0.5400 1.24e-15
19 2kn9:A 81 49 0.5192 0.3333 0.5510 4.34e-15 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
20 6rxn:A 45 52 0.5769 0.6667 0.5769 1.02e-14
21 1s24:A 56 47 0.4615 0.4286 0.5106 2.98e-13
22 1dx8:A 70 49 0.4423 0.3286 0.4694 9.22e-12 1h7v:A
23 8ito:B 74 42 0.4423 0.3108 0.5476 1.46e-10 8ito:A
24 8f6t:A 428 41 0.4038 0.0491 0.5122 6.43e-10
25 2ms3:A 57 48 0.3846 0.3509 0.4167 6.74e-09
26 2hr5:A 170 48 0.3462 0.1059 0.3750 7.08e-04 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H
27 1b71:A 191 48 0.2692 0.0733 0.2917 0.35 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
28 8ouw:2 701 48 0.3077 0.0228 0.3333 0.47
29 6rax:2 605 40 0.2500 0.0215 0.3250 0.53 6raw:2, 6ray:2
30 7r7j:B 574 39 0.2500 0.0226 0.3333 1.2 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
31 7ane:d 343 20 0.1923 0.0292 0.5000 1.3
32 8k7x:A 673 44 0.2692 0.0208 0.3182 1.4 8k7y:A, 8k7y:E
33 5hy7:B 1170 23 0.2115 0.0094 0.4783 1.5
34 3i74:A 642 24 0.1731 0.0140 0.3750 1.8 3i74:B
35 8ak4:A 513 30 0.2500 0.0253 0.4333 1.9
36 2lcq:A 161 42 0.2500 0.0807 0.3095 2.8
37 7w1y:2 706 42 0.2500 0.0184 0.3095 4.5 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2
38 1u3c:A 485 43 0.3077 0.0330 0.3721 6.1 1u3d:A
39 4s0r:D 447 23 0.1538 0.0179 0.3478 6.3 4lnf:A, 4lnf:B, 4lnf:C, 4lnf:D, 4lnf:E, 4lnf:F, 4lnf:G, 4lnf:H, 4lnf:I, 4lnf:J, 4lnf:K, 4lnf:L, 4lni:A, 4lni:B, 4lni:C, 4lni:D, 4lni:E, 4lni:F, 4lni:G, 4lni:H, 4lni:I, 4lni:J, 4lni:K, 4lni:L, 4lnk:A, 4lnk:B, 4lnk:C, 4lnk:D, 4lnk:E, 4lnk:F, 4lnn:A, 4lnn:B, 4lnn:C, 4lnn:D, 4lnn:E, 4lnn:F, 4lnn:G, 4lnn:H, 4lnn:I, 4lnn:J, 4lnn:K, 4lnn:L, 4lno:A, 4lno:B, 4lno:C, 4lno:D, 4lno:E, 4lno:F, 4s0r:A, 4s0r:C, 4s0r:F, 4s0r:G, 4s0r:I, 4s0r:E, 4s0r:L, 4s0r:M, 4s0r:J, 4s0r:K, 4s0r:N, 4s0r:B, 4s0r:H, 7tfc:B, 7tfc:C, 7tfc:Q, 7tfc:R, 7tfc:F, 7tfc:G, 7tfc:H, 7tfc:P, 7tfc:O, 7tfc:S, 7tfc:I, 7tfc:N, 7tfc:T, 7tfc:A
40 7a9g:AAA 549 32 0.2500 0.0237 0.4062 8.4 7a9g:BBB, 7a9h:AAA, 7a9h:BBB, 8ogh:A, 8ogh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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