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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKKYRVQPDGRFELKRFDPDDTSAFEGGKQAALEALAVLNRRLEKLQELLYAEGQHKVLVVLQAMDAGGKDGTIRVVFDG
VNPSGVRVASFGVPTEQELARDYLWRVHQQVPRKGELVIFNRSHYEDVLVVRVKNLVPQQVWQKRYRHIREFERMLADEG
TTILKFFLHISKDEQRQRLQERLDNPEKRWKFRMGDLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRNWLVS
HILVETLEGLAMQYPQPIVIE

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5o6m:D 264 264 0.9962 0.9848 0.9848 0.0 5lc9:B, 5lc9:C, 5lc9:D, 5lcd:A, 5lcd:B, 5lcd:C, 5lcd:D, 5ld1:A, 5ld1:D, 5ld1:B, 5ld1:C, 5ldb:A, 5ldb:B, 5ldb:C, 5ldb:D, 5maq:A, 5maq:B, 5maq:C, 5maq:D, 5o6k:A, 5o6k:B, 5o6k:C, 5o6k:D, 5o6m:A, 5o6m:B, 5o6m:C
2 6aqe:B 266 255 0.4521 0.4436 0.4627 5.35e-83 6aqe:A, 7nmj:A, 7nmj:B, 7nmj:C, 7nmj:D, 7plj:A, 7plj:B, 7plj:C, 7plj:D
3 6anh:A 300 268 0.4521 0.3933 0.4403 1.03e-75 6an9:A, 6ang:A, 6aqn:A, 6au0:A, 6b18:A
4 5llf:D 266 178 0.2414 0.2368 0.3539 1.55e-32 5ll0:A, 5ll0:B, 5ll0:C, 5ll0:D, 5llb:A, 5llb:B, 5llb:C, 5llb:D, 5llf:A, 5llf:B, 5llf:C
5 6dzg:A 288 213 0.2644 0.2396 0.3239 1.60e-29 6dzg:B, 6dzg:C, 6dzg:D
6 1xs5:A 240 51 0.0575 0.0625 0.2941 0.95
7 3nua:B 237 36 0.0613 0.0675 0.4444 0.97 3nua:A
8 3gvp:A 433 105 0.1034 0.0624 0.2571 2.5 3gvp:B, 3gvp:C, 3gvp:D, 3mtg:A, 3mtg:B
9 7ef9:A 414 104 0.1034 0.0652 0.2596 5.0 7ef8:A
10 6jdd:A 176 50 0.0575 0.0852 0.3000 5.5
11 1war:A 310 41 0.0498 0.0419 0.3171 5.7 2bq8:X
12 8ag6:B 975 24 0.0498 0.0133 0.5417 6.9 2o8b:B, 2o8c:B, 2o8d:B, 2o8e:B, 2o8f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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