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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKKVFVLGAGTMGAGIVQAFAAKGCEVIVRDIKEEFVDRGIATITKSLSKLVAKEKITEADKEEILSRISGTTDMKLAAD
CDLVVEAAIENMKIKKEIFAELDGICKPETILASNTSSLSITEVASATKRADKVIGMHFFNPAPVMKLVEVIRGAATSQE
TFDAVKEMSESIGKTPVEVAEAPGFVVNRILIPMINEATFILQEGVAKEEDIDAAMKLGANHPMGPLALGDLIGLDVCLA
IMDVLYNETGDTKYRASSLLRKYVRAGWLGRKTGKGFYDY

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kug:A 282 280 1.0000 0.9929 1.0000 0.0 4kug:B, 4kug:C, 4kug:D, 4kuh:A, 4kuh:B, 4kuh:C, 4kuh:D, 4kuh:E, 4kuh:F, 4kuh:G, 4kuh:H
2 6aa8:E 281 279 0.8071 0.8043 0.8100 2.95e-166 6aa8:F
3 4pzd:A 283 280 0.5500 0.5442 0.5500 2.54e-108 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
4 1f12:A 293 288 0.4750 0.4539 0.4618 1.39e-79 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
5 6iun:B 692 280 0.3821 0.1546 0.3821 1.48e-53 6iun:A
6 6iun:B 692 130 0.1286 0.0520 0.2769 1.05e-04 6iun:A
7 3zwa:A 727 290 0.4036 0.1554 0.3897 1.12e-49 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
8 3zwa:A 727 87 0.1000 0.0385 0.3218 0.003 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
9 6ysw:A 707 258 0.3464 0.1372 0.3760 6.49e-49
10 8oqs:B 735 285 0.3607 0.1374 0.3544 3.85e-48 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
11 1wdl:A 715 262 0.3607 0.1413 0.3855 8.23e-46 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
12 3k6j:A 430 281 0.3429 0.2233 0.3416 1.70e-45
13 3k6j:A 430 55 0.0750 0.0488 0.3818 0.041
14 6tnm:A 719 263 0.3429 0.1335 0.3650 5.04e-45
15 6tnm:A 719 52 0.0643 0.0250 0.3462 1.6
16 4om8:A 309 289 0.3107 0.2816 0.3010 4.18e-39 4om8:B
17 4dyd:A 283 285 0.3214 0.3180 0.3158 4.66e-39 4e13:A
18 3f3s:A 312 230 0.2464 0.2212 0.3000 2.26e-25 3f3s:B
19 3adp:A 310 230 0.2464 0.2226 0.3000 7.13e-21
20 3o03:A 254 31 0.0464 0.0512 0.4194 0.38
21 2bc0:A 473 56 0.0750 0.0444 0.3750 0.40 2bc0:B, 2bc1:A, 2bc1:B, 2bcp:A, 2bcp:B
22 4zad:A 511 91 0.0857 0.0470 0.2637 0.55 4zad:B
23 1z82:A 312 72 0.0893 0.0801 0.3472 0.74 1z82:B
24 5yjl:B 415 58 0.0714 0.0482 0.3448 0.84 5yjl:A
25 8c0z:E 424 37 0.0536 0.0354 0.4054 0.93
26 1mfz:A 436 80 0.0857 0.0550 0.3000 1.6 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
27 4gsl:A 598 48 0.0643 0.0301 0.3750 1.9 4gsl:B, 3rui:A, 3t7e:A, 3t7g:B, 3t7g:A, 3vh1:A, 3vh2:A, 3vh3:A, 3vh4:A, 5yec:A, 5yec:C
28 5jpi:A 496 31 0.0500 0.0282 0.4516 2.0 5hm8:A, 5hm8:B, 5hm8:C, 5hm8:D, 5hm8:E, 5hm8:F, 5hm8:G, 5hm8:H, 5jpi:B, 5jpi:C, 5jpi:D, 5jxw:A, 5jxw:B, 5jxw:C, 5jxw:D, 5t8k:A, 5t8k:C, 5t8k:B, 5t8k:D, 5tj9:A, 5tj9:B, 5tj9:C, 5tj9:D, 5tls:A, 5tls:B, 5tls:C, 5tls:D, 5utu:A, 5utu:B, 5utu:C, 5utu:D, 5utu:E, 5utu:F, 5utu:G, 5utu:H
29 3ew9:A 314 45 0.0500 0.0446 0.3111 2.0 3etl:A, 3ewa:A
30 4gsk:B 572 48 0.0643 0.0315 0.3750 2.1 4gsk:A
31 3dme:A 366 52 0.0750 0.0574 0.4038 2.4 3dme:B
32 4ure:B 248 69 0.0786 0.0887 0.3188 2.7 4urf:A, 4urf:B
33 4j7c:B 217 37 0.0536 0.0691 0.4054 3.0 2hms:A, 2hms:B, 2hms:C, 2hms:D, 2hmt:A, 2hmt:B, 2hmu:A, 2hmu:B, 2hmv:A, 2hmv:B, 2hmw:A, 2hmw:B, 4j7c:A, 4j7c:C, 4j7c:D, 4j7c:E, 4j7c:F, 4j7c:G, 4j7c:H, 4j90:A, 4j90:B, 4j91:A, 4j91:B, 4j91:C, 4j91:D, 8k16:A, 8k16:B, 8k1k:A, 8k1k:B, 8k1s:A, 8k1s:B, 8k1s:C, 8k1s:D, 8k1s:E, 8k1s:F, 8k1s:G, 8k1s:H, 8k1t:A, 8k1t:B, 8k1t:C, 8k1t:D, 8k1t:E, 8k1t:F, 8k1t:G, 8k1t:H, 8k1u:A, 8k1u:B, 8k1u:C, 8k1u:D, 8k1u:E, 8k1u:F, 8k1u:G, 8k1u:H, 1lsu:A, 1lsu:B, 6s2j:A, 6s2j:B, 6s5b:A, 6s5b:B, 6s5b:C, 6s5b:D, 6s5b:E, 6s5b:F, 6s5b:G, 6s5b:H, 6s5c:A, 6s5c:B, 6s5d:A, 6s5d:B, 6s5e:A, 6s5e:B, 6s5e:C, 6s5e:D, 6s5e:E, 6s5e:F, 6s5e:G, 6s5e:H, 6s5g:A, 6s5g:B, 6s5g:C, 6s5g:D, 6s5g:E, 6s5g:F, 6s5g:G, 6s5g:H, 6s5n:A, 6s5n:B, 6s5n:C, 6s5n:D, 6s5n:E, 6s5n:F, 6s5n:G, 6s5n:H, 6s5o:A, 6s5o:B, 6s5o:C, 6s5o:D, 6s5o:E, 6s5o:F, 6s5o:G, 6s5o:H, 6s7r:A, 6s7r:B, 6s7r:C, 6s7r:D, 6s7r:E, 6s7r:F, 6s7r:G, 6s7r:H, 6s7r:I, 6s7r:J, 6s7r:K, 6s7r:L, 6s7r:M, 6s7r:N, 6s7r:O, 6s7r:P, 8xmh:A, 8xmh:B, 8xmh:C, 8xmh:D, 8xmh:E, 8xmh:F, 8xmh:G, 8xmh:H, 8xmi:A, 8xmi:B, 8xmi:C, 8xmi:D, 8xmi:E, 8xmi:F, 8xmi:G, 8xmi:H
34 2zat:A 251 45 0.0643 0.0717 0.4000 3.3 2zat:B, 2zat:C, 2zat:D
35 7e6i:A 484 41 0.0536 0.0310 0.3659 3.9
36 6vpb:B 324 183 0.1214 0.1049 0.1858 3.9
37 6ci9:D 259 46 0.0464 0.0502 0.2826 4.0 6ci9:A, 6ci9:B, 6ci9:C, 6ci9:E, 6ci9:F, 6ci9:G, 6ci9:H, 6ci9:I, 6ci9:J, 6ci9:K, 6ci9:L, 6ci9:M, 6ci9:N, 6ci9:O, 6ci9:P
38 4pwy:A 250 81 0.0929 0.1040 0.3210 4.6
39 1f8w:A 447 97 0.1071 0.0671 0.3093 5.0 1joa:A, 1nhp:A, 1nhq:A, 1nhr:A, 1nhs:A, 1npx:A, 2npx:A
40 6vsp:B 252 77 0.0929 0.1032 0.3377 5.7 6vsp:A, 6xew:A, 6xew:B, 6xex:A
41 5mh5:A 308 27 0.0464 0.0422 0.4815 5.9 5mh5:B, 5mh6:A, 5mh6:B, 5mh6:C, 5mh6:D, 5mha:A, 5mha:B
42 1atg:A 231 98 0.0857 0.1039 0.2449 6.7
43 4prl:A 330 31 0.0357 0.0303 0.3226 6.8 4prl:B
44 3o4r:A 254 106 0.1036 0.1142 0.2736 7.0 3o4r:B, 3o4r:C, 3o4r:D
45 5er0:A 450 30 0.0393 0.0244 0.3667 7.1 5er0:B, 5er0:C, 5er0:D, 5vn0:A, 5vn0:B, 5vn0:C, 5vn0:D, 5vn0:E, 5vn0:F, 5vn0:G, 5vn0:H, 5voh:A, 5voh:B, 5voh:C, 5voh:D
46 3wfj:F 263 138 0.1179 0.1255 0.2391 8.2 3wfj:H
47 5b82:A 161 40 0.0464 0.0807 0.3250 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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