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BioLiP
>protein
MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQEFLQKLKVEIVVEDNQVDMVVDKIIAAARTGEIGDGKIFIS
PVEQVIRIRTGEKN

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wm7:G 94 94 1.0000 1.0000 1.0000 2.26e-61
2 3n5b:A 112 108 1.0000 0.8393 0.8704 9.30e-58 8wm7:E
3 4c3k:D 101 94 0.8936 0.8317 0.8936 5.32e-56 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
4 2xbp:A 113 108 0.8936 0.7434 0.7778 1.87e-52 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
5 1ul3:B 94 94 0.8404 0.8404 0.8404 2.89e-50 1ul3:C
6 3lf0:A 99 94 0.5532 0.5253 0.5532 4.46e-36
7 3lf0:B 112 107 0.5638 0.4732 0.4953 5.07e-35 3lf0:C
8 2eg2:A 95 94 0.6489 0.6421 0.6489 9.52e-35
9 4cnz:A 100 96 0.6277 0.5900 0.6146 8.18e-34 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
10 5l9n:A 92 94 0.6170 0.6304 0.6170 2.19e-33
11 4cnz:E 112 108 0.6277 0.5268 0.5463 5.00e-32 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 2o66:B 108 92 0.5638 0.4907 0.5761 2.79e-30 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
13 3ta0:C 99 94 0.5638 0.5354 0.5638 4.64e-30 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
14 2j9d:B 103 94 0.6064 0.5534 0.6064 9.40e-30 2j9d:H, 2j9d:K
15 2rd5:D 126 107 0.5851 0.4365 0.5140 1.37e-29 2rd5:C
16 7p4v:A 113 107 0.6064 0.5044 0.5327 1.71e-29
17 2gnk:A 95 94 0.5319 0.5263 0.5319 5.86e-29
18 2ns1:B 113 108 0.5532 0.4602 0.4815 6.80e-29 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
19 2j9e:B 119 107 0.6064 0.4790 0.5327 1.21e-27 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
20 3ta1:D 115 108 0.5745 0.4696 0.5000 2.27e-27 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
21 7p50:A 121 107 0.5745 0.4463 0.5047 8.45e-27 7p50:B, 7p50:C
22 6yc7:F 94 93 0.4362 0.4362 0.4409 4.72e-26
23 6yc7:A 105 100 0.4574 0.4095 0.4300 3.30e-25 6yc7:B, 6yc7:E, 6yc7:C
24 3ncr:C 116 108 0.5638 0.4569 0.4907 1.03e-24 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
25 1v3s:A 97 95 0.5213 0.5052 0.5158 1.70e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
26 7o4x:A 103 95 0.4574 0.4175 0.4526 3.78e-20
27 4usj:C 142 105 0.4894 0.3239 0.4381 6.71e-20 4usi:A, 4usi:C, 4usi:B, 4usj:D
28 4ozl:A 104 92 0.5213 0.4712 0.5326 8.76e-19 4ozn:B
29 4ozn:A 116 103 0.5319 0.4310 0.4854 7.63e-18 4ozj:A, 4ozn:C
30 4rx6:B 115 107 0.4043 0.3304 0.3551 1.61e-13 4r25:A, 4rx6:A, 4rx6:D
31 3lvt:A 833 48 0.1596 0.0180 0.3125 1.4
32 8wm6:k 180 33 0.1489 0.0778 0.4242 1.9 8wmj:k, 8wmv:k, 8wmw:k
33 4yd9:A 1656 54 0.1702 0.0097 0.2963 3.8 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
34 7o9q:B 308 12 0.0957 0.0292 0.7500 5.4 7o9q:A
35 7d8f:A 234 35 0.1277 0.0513 0.3429 6.9 7d8d:A
36 8tyx:B 162 77 0.1702 0.0988 0.2078 8.6 8tyy:B
37 8sr6:A 451 47 0.1596 0.0333 0.3191 9.8 5czy:A, 8swi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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