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BioLiP
>protein
MKKRLTESQFQEAIQGLEVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLPEGYARVTAVLPE
HQAYIVRKWEADAKKKQ

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qa9:C 107 96 0.9897 0.8972 1.0000 4.46e-67 5clv:A, 5clv:B, 5clv:E, 5clv:F, 5clv:I, 5clv:J, 5clv:M, 5clv:N, 5cm3:A, 5cm3:B, 8qa9:D, 2w7n:A, 2w7n:B
2 7bcb:B 97 76 0.3402 0.3402 0.4342 5.20e-07 7bca:A, 7bca:B, 7bcb:A
3 7w5s:A 302 45 0.1649 0.0530 0.3556 1.1 7w5t:A, 7w5v:A
4 5i10:A 192 64 0.2165 0.1094 0.3281 1.3
5 3szm:C 191 42 0.1340 0.0681 0.3095 4.2 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
6 8hvc:A 602 59 0.1649 0.0266 0.2712 4.8 8hvb:A, 8hvd:A
7 6iub:A 264 30 0.1031 0.0379 0.3333 4.9 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
8 8agd:A 1111 45 0.1443 0.0126 0.3111 5.5 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
9 8p2f:1 61 24 0.0928 0.1475 0.3750 7.2 7asm:V, 7asn:V, 7aso:c, 7asp:V, 6ddd:J, 6ddg:J, 6fxc:AV, 6fxc:BV, 5hkv:U, 5hl7:U, 6hma:V, 5li0:0, 5nd8:0, 5nd9:0, 5ngm:AV, 7nhl:1, 7nhm:1, 8p2g:1, 8p2h:1, 7p48:V, 6s0x:V, 6s0z:V, 6s12:V, 6s13:V, 6sj6:0, 5t7v:LA, 5tcu:LA, 7ttu:J, 7ttw:J, 4wce:U, 4wfa:U, 4wfb:U, 6wqn:J, 6wqq:J, 6wrs:J, 6wru:J, 8y36:V, 8y37:V, 8y38:V, 8y39:V, 6yef:0
10 5dw8:A 260 20 0.0928 0.0346 0.4500 8.0 5dw8:B, 5j16:A, 5j16:B, 5j16:C, 5j16:D
11 7qd1:A 311 22 0.1340 0.0418 0.5909 8.3 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
12 8dek:B 441 43 0.1443 0.0317 0.3256 9.1 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
13 8qx5:A 158 26 0.1340 0.0823 0.5000 9.5 8qx5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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