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BioLiP
>protein
MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEV
KS

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2p7c:B 82 82 1.0000 1.0000 1.0000 4.96e-56
2 1sax:A 120 74 0.3780 0.2583 0.4189 3.37e-16 2d45:A, 2d45:B, 2d45:C, 2d45:D, 1sax:B
3 1xsd:A 125 71 0.3415 0.2240 0.3944 1.39e-12
4 2v9k:A 467 38 0.1829 0.0321 0.3947 0.40
5 6br1:F 332 49 0.1829 0.0452 0.3061 1.7 8ahm:F, 8b7b:F, 8bdf:F, 8bdg:F, 6brf:F, 6bry:F, 6bs2:F, 8clb:F, 8clc:F, 8clf:F, 8clh:F, 6d88:F, 8diq:F, 7e4q:F, 7e4y:F, 6gj4:F, 8huh:F, 6hx8:F, 5iyz:F, 5jcb:F, 5lyj:F, 7lz7:F, 5m7e:F, 5m8g:F, 5mf4:F, 4o2a:F, 4o2b:F, 6o5m:F, 6o61:F, 7ogn:F, 5osk:F, 6qqn:F, 6qtn:F, 6s9e:F, 5sb6:F, 6ses:F, 6x1c:F, 6x1e:F, 6x1f:F, 5xaf:F, 5xag:F, 5z4p:F
6 7dwx:A 605 45 0.2195 0.0298 0.4000 3.2 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
7 8he6:B 120 20 0.1341 0.0917 0.5500 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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