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BioLiP
>protein
MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGK
IFVSPVDQTIRIRTGEKN

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xbp:A 113 108 0.9898 0.8584 0.8981 5.58e-61 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
2 4c3k:D 101 98 0.9592 0.9307 0.9592 1.97e-59 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
3 3n5b:A 112 108 0.9082 0.7946 0.8241 3.32e-57 8wm7:E
4 8wm7:G 94 98 0.8673 0.9043 0.8673 6.45e-55
5 1ul3:B 94 98 0.7755 0.8085 0.7755 2.21e-48 1ul3:C
6 3lf0:B 112 107 0.6020 0.5268 0.5514 1.15e-38 3lf0:C
7 3lf0:A 99 98 0.5612 0.5556 0.5612 8.65e-36
8 4cnz:E 112 108 0.6122 0.5357 0.5556 6.52e-34 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
9 2eg2:A 95 98 0.6020 0.6211 0.6020 7.41e-33
10 4cnz:A 100 98 0.5816 0.5700 0.5816 2.79e-32 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
11 5l9n:A 92 98 0.5918 0.6304 0.5918 7.32e-32
12 7p4v:A 113 107 0.6020 0.5221 0.5514 9.96e-32
13 2ns1:B 113 108 0.5510 0.4779 0.5000 2.92e-30 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
14 2j9e:B 119 107 0.6020 0.4958 0.5514 4.41e-30 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
15 2rd5:D 126 107 0.5612 0.4365 0.5140 4.77e-30 2rd5:C
16 6yc7:A 105 100 0.4898 0.4571 0.4800 8.46e-30 6yc7:B, 6yc7:E, 6yc7:C
17 2j9d:B 103 97 0.5816 0.5534 0.5876 1.59e-29 2j9d:H, 2j9d:K
18 7p50:A 121 107 0.5612 0.4545 0.5140 1.85e-29 7p50:B, 7p50:C
19 2o66:B 108 96 0.5306 0.4815 0.5417 2.55e-29 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
20 3ta1:D 115 108 0.5510 0.4696 0.5000 4.77e-28 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
21 3ta0:C 99 98 0.5306 0.5253 0.5306 6.61e-28 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
22 2gnk:A 95 98 0.5102 0.5263 0.5102 6.35e-27
23 6yc7:F 94 97 0.4490 0.4681 0.4536 5.32e-26
24 3ncr:C 116 108 0.5612 0.4741 0.5093 9.27e-25 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
25 1v3s:A 97 98 0.5000 0.5052 0.5000 3.81e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
26 4usj:C 142 105 0.5204 0.3592 0.4857 3.78e-21 4usi:A, 4usi:C, 4usi:B, 4usj:D
27 4ozn:A 116 103 0.5102 0.4310 0.4854 4.20e-20 4ozj:A, 4ozn:C
28 7o4x:A 103 97 0.4184 0.3981 0.4227 2.20e-19
29 4ozl:A 104 96 0.4592 0.4327 0.4688 2.31e-16 4ozn:B
30 4rx6:B 115 107 0.4082 0.3478 0.3738 1.36e-15 4r25:A, 4rx6:A, 4rx6:D
31 6cxs:B 599 40 0.1327 0.0217 0.3250 1.8 6cxs:A
32 7d38:A 288 68 0.1837 0.0625 0.2647 2.1 7d39:A, 7d3a:A, 7d3b:A
33 8tls:A 116 42 0.1327 0.1121 0.3095 3.9 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
34 7oj2:A 353 40 0.1633 0.0453 0.4000 3.9
35 4ks0:B 499 65 0.1735 0.0341 0.2615 3.9
36 5kf0:A 480 37 0.1531 0.0312 0.4054 4.0 5jry:A, 5kf0:B, 5kf0:C, 5kf0:D
37 3lvt:A 833 86 0.2449 0.0288 0.2791 4.8
38 7oj1:A 401 40 0.1633 0.0399 0.4000 4.8
39 7oj1:B 425 40 0.1633 0.0376 0.4000 5.1
40 3w15:A 336 26 0.0918 0.0268 0.3462 5.9
41 8wm6:k 180 32 0.1327 0.0722 0.4062 7.4 8wmj:k, 8wmv:k, 8wmw:k
42 3ldf:A 380 48 0.1531 0.0395 0.3125 7.7
43 4wk1:A 92 87 0.2551 0.2717 0.2874 7.9
44 1dxq:A 273 60 0.1633 0.0586 0.2667 8.1 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
45 5upy:A 350 40 0.1429 0.0400 0.3500 8.6
46 3t0q:A 304 55 0.1633 0.0526 0.2909 9.6
47 5upx:A 380 40 0.1429 0.0368 0.3500 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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