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BioLiP
>protein
MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVE
DVIRIRTGERGEQAI

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2eg2:A 95 95 1.0000 1.0000 1.0000 2.85e-59
2 5l9n:A 92 89 0.6842 0.7065 0.7303 6.06e-40
3 4cnz:A 100 100 0.6105 0.5800 0.5800 5.10e-35 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
4 8wm7:G 94 94 0.6421 0.6489 0.6489 9.63e-35
5 4c3k:D 101 98 0.6421 0.6040 0.6224 1.11e-34 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
6 3lf0:A 99 97 0.5684 0.5455 0.5567 2.92e-34
7 6yc7:F 94 95 0.5684 0.5745 0.5684 4.41e-34
8 1ul3:B 94 95 0.6421 0.6489 0.6421 5.74e-34 1ul3:C
9 2o66:B 108 93 0.5579 0.4907 0.5699 6.93e-34 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
10 7p4v:A 113 112 0.6421 0.5398 0.5446 7.67e-34
11 6yc7:A 105 105 0.5789 0.5238 0.5238 1.06e-33 6yc7:B, 6yc7:E, 6yc7:C
12 3n5b:A 112 112 0.6526 0.5536 0.5536 1.49e-33 8wm7:E
13 4cnz:E 112 112 0.6105 0.5179 0.5179 3.38e-33 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
14 2gnk:A 95 95 0.5684 0.5684 0.5684 5.84e-33
15 3lf0:B 112 111 0.5684 0.4821 0.4865 4.98e-32 3lf0:C
16 7p50:A 121 112 0.6211 0.4876 0.5268 6.67e-32 7p50:B, 7p50:C
17 2xbp:A 113 112 0.6421 0.5398 0.5446 9.06e-32 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
18 2j9d:B 103 99 0.6000 0.5534 0.5758 2.50e-31 2j9d:H, 2j9d:K
19 2rd5:D 126 110 0.5474 0.4127 0.4727 7.74e-30 2rd5:C
20 3ncr:C 116 112 0.6421 0.5259 0.5446 1.44e-29 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
21 2ns1:B 113 112 0.5684 0.4779 0.4821 3.01e-29 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
22 2j9e:B 119 112 0.6000 0.4790 0.5089 3.45e-29 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
23 3ta0:C 99 92 0.5579 0.5354 0.5761 1.01e-26 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
24 3ta1:D 115 106 0.5579 0.4609 0.5000 2.12e-24 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
25 7o4x:A 103 100 0.4526 0.4175 0.4300 7.81e-22
26 1v3s:A 97 96 0.4842 0.4742 0.4792 2.97e-21 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
27 4ozl:A 104 97 0.5053 0.4615 0.4948 3.42e-20 4ozn:B
28 4ozn:A 116 109 0.5053 0.4138 0.4404 5.41e-18 4ozj:A, 4ozn:C
29 4usj:C 142 110 0.4737 0.3169 0.4091 1.95e-17 4usi:A, 4usi:C, 4usi:B, 4usj:D
30 4rx6:B 115 112 0.3789 0.3130 0.3214 8.00e-14 4r25:A, 4rx6:A, 4rx6:D
31 2dcl:A 99 44 0.1895 0.1818 0.4091 2.6 2dcl:C, 2dcl:B
32 3k6j:A 430 31 0.1263 0.0279 0.3871 2.6
33 8c83:x 259 74 0.2105 0.0772 0.2703 4.4 8cah:G, 8cas:x, 8cbj:K
34 2pyy:B 217 60 0.1895 0.0829 0.3000 7.3 2pyy:A, 2pyy:C
35 3sxp:D 314 62 0.1474 0.0446 0.2258 8.4 3sxp:A, 3sxp:B, 3sxp:C, 3sxp:E
36 8hlk:A 910 46 0.1474 0.0154 0.3043 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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