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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVY
EGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAH
GIPVPPYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEI
GGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAY
FDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDLVSFGYDQKDAEGFIKIQALRLRVRALVER

The query sequence (length=386) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1j1z:A 386 386 1.0000 1.0000 1.0000 0.0 1j1z:B, 1j1z:C, 1j1z:D, 1j20:A, 1j20:B, 1j20:C, 1j20:D, 1j21:A, 1j21:B, 1j21:C, 1j21:D, 1kh2:A, 1kh2:B, 1kh2:C, 1kh2:D, 1kh3:A, 1kh3:B, 1kh3:C, 1kh3:D, 1kor:A, 1kor:B, 1kor:C, 1kor:D
2 2nz2:A 402 393 0.5311 0.5100 0.5216 8.58e-136
3 7k5z:A 390 391 0.5078 0.5026 0.5013 3.99e-135 7k5z:B, 7k5z:C, 7k5z:D
4 4xfj:B 397 392 0.4197 0.4081 0.4133 5.97e-105 4xfj:A
5 5us8:A 445 366 0.3264 0.2831 0.3443 6.08e-45 6e5y:A, 5us8:B
6 1kp3:A 439 387 0.2927 0.2574 0.2920 4.42e-38 1k97:A, 1kp2:A
7 3bl5:E 199 61 0.0518 0.1005 0.3279 0.14 3bl5:A, 3bl5:B, 3bl5:C, 3bl5:D, 3bl5:F
8 3o7w:A 282 66 0.0415 0.0567 0.2424 0.63
9 3s2e:A 340 49 0.0570 0.0647 0.4490 1.7 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
10 8cnz:D 261 35 0.0363 0.0536 0.4000 2.0 8cnz:A, 8cnz:B, 8cnz:C, 8cnz:E, 8cnz:F, 8cnz:G, 8cp3:A, 8cp3:B, 8cp4:A, 8cp4:B, 8cp4:C, 8cp4:D, 8cp4:E, 8cp4:F, 8cp4:G
11 8qca:B 756 38 0.0389 0.0198 0.3947 2.1
12 8y46:A 251 78 0.0596 0.0916 0.2949 6.1 8y11:A, 8y11:B, 8y11:D, 8y46:B, 8y46:D, 8y4b:A, 8y4b:B, 8y4b:C, 8y4b:D, 8y4j:A, 8y4j:C, 8y4j:D
13 2ywc:A 475 70 0.0544 0.0442 0.3000 6.6 2ywc:B, 2ywc:C, 2ywc:D
14 4mae:A 577 43 0.0363 0.0243 0.3256 7.7 6fkw:A, 6fkw:B, 6fkw:C, 6fkw:D, 4mae:B
15 2pg3:A 221 62 0.0518 0.0905 0.3226 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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