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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKISARNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESARSLQLAAGKEVVAVVKAPWVLLMTDSSGYRLSARNI
LTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVIKASNVILGVP

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1h9m:A 141 141 1.0000 1.0000 1.0000 4.43e-95 1h9m:B
2 1o7l:B 256 140 0.3546 0.1953 0.3571 2.03e-16 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D
3 9bed:A 74 67 0.2270 0.4324 0.4776 1.97e-14 9beb:A, 9beb:E, 9beb:C, 9beb:F, 9beb:B, 9beb:D, 9bed:D, 9bed:C, 9bed:F, 9bed:B, 9bed:E, 9bel:A, 9bel:C, 9bel:B, 9bel:E, 9bel:D, 9bel:F, 9bem:A, 9bem:C, 9bem:B, 9bem:E, 9bem:F, 9bem:D, 9beo:A, 9beo:E, 9beo:C, 9beo:B, 9beo:D, 9beo:F, 9d2c:A, 9d2c:D, 9d2c:B, 9d2c:C, 9d2c:E, 9d2c:F, 9d2c:H, 9d2c:K, 9d2c:J, 9d2c:I, 9d2c:L, 9d2c:M
4 9bed:A 74 73 0.2057 0.3919 0.3973 4.60e-12 9beb:A, 9beb:E, 9beb:C, 9beb:F, 9beb:B, 9beb:D, 9bed:D, 9bed:C, 9bed:F, 9bed:B, 9bed:E, 9bel:A, 9bel:C, 9bel:B, 9bel:E, 9bel:D, 9bel:F, 9bem:A, 9bem:C, 9bem:B, 9bem:E, 9bem:F, 9bem:D, 9beo:A, 9beo:E, 9beo:C, 9beo:B, 9beo:D, 9beo:F, 9d2c:A, 9d2c:D, 9d2c:B, 9d2c:C, 9d2c:E, 9d2c:F, 9d2c:H, 9d2c:K, 9d2c:J, 9d2c:I, 9d2c:L, 9d2c:M
5 1gug:A 67 64 0.2057 0.4328 0.4531 8.69e-12 1gug:B, 1gug:C, 1gug:D, 1gug:E, 1gug:F, 1gun:A, 1gun:B, 1gun:C, 1gun:D, 1gun:E, 1gun:F, 1guo:A, 1guo:B, 1guo:C, 1guo:D, 1guo:E, 1guo:F
6 1gug:A 67 65 0.1986 0.4179 0.4308 1.39e-10 1gug:B, 1gug:C, 1gug:D, 1gug:E, 1gug:F, 1gun:A, 1gun:B, 1gun:C, 1gun:D, 1gun:E, 1gun:F, 1guo:A, 1guo:B, 1guo:C, 1guo:D, 1guo:E, 1guo:F
7 1fr3:A 67 63 0.1702 0.3582 0.3810 5.95e-07 1fr3:D, 1fr3:B, 1fr3:E, 1fr3:F, 1fr3:C, 1fr3:G, 1fr3:J, 1fr3:I, 1fr3:H, 1fr3:K, 1fr3:L
8 1fr3:A 67 61 0.1702 0.3582 0.3934 3.65e-05 1fr3:D, 1fr3:B, 1fr3:E, 1fr3:F, 1fr3:C, 1fr3:G, 1fr3:J, 1fr3:I, 1fr3:H, 1fr3:K, 1fr3:L
9 3d31:A 348 130 0.2411 0.0977 0.2615 0.065 3d31:B
10 4j9v:A 456 55 0.1277 0.0395 0.3273 0.60 4j9u:H, 4j9u:G, 4j9u:E, 4j9u:F, 4j9v:B, 6v4k:E, 6v4k:F, 6v4k:G, 6v4k:H, 6v4l:C, 6v4l:D
11 8ssl:A 1072 116 0.2270 0.0299 0.2759 3.1 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
12 4aw7:A 565 71 0.1277 0.0319 0.2535 3.5
13 8y6k:A 741 33 0.0993 0.0189 0.4242 3.7 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
14 2as9:A 207 74 0.1348 0.0918 0.2568 5.3 2as9:B
15 6hiy:DA 1426 76 0.1418 0.0140 0.2632 7.8
16 6hiv:DA 1557 76 0.1418 0.0128 0.2632 7.8 6hiw:DA, 7pub:DA
17 3a52:A 400 80 0.1560 0.0550 0.2750 8.7 3a52:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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